Everson, Richard
Context-Aware Generative Models for Prediction of Aircraft Ground Tracks
Pepper, Nick, De Ath, George, Thomas, Marc, Everson, Richard, Dodwell, Tim
Trajectory prediction (TP) plays an important role in supporting the decision-making of Air Traffic Controllers (ATCOs). Traditional TP methods are deterministic and physics-based, with parameters that are calibrated using aircraft surveillance data harvested across the world. These models are, therefore, agnostic to the intentions of the pilots and ATCOs, which can have a significant effect on the observed trajectory, particularly in the lateral plane. This work proposes a generative method for lateral TP, using probabilistic machine learning to model the effect of the epistemic uncertainty arising from the unknown effect of pilot behaviour and ATCO intentions. The models are trained to be specific to a particular sector, allowing local procedures such as coordinated entry and exit points to be modelled. A dataset comprising a week's worth of aircraft surveillance data, passing through a busy sector of the United Kingdom's upper airspace, was used to train and test the models. Specifically, a piecewise linear model was used as a functional, low-dimensional representation of the ground tracks, with its control points determined by a generative model conditioned on partial context. It was found that, of the investigated models, a Bayesian Neural Network using the Laplace approximation was able to generate the most plausible trajectories in order to emulate the flow of traffic through the sector.
How Bayesian Should Bayesian Optimisation Be?
De Ath, George, Everson, Richard, Fieldsend, Jonathan
Bayesian optimisation (BO) uses probabilistic surrogate models - usually Gaussian processes (GPs) - for the optimisation of expensive black-box functions. At each BO iteration, the GP hyperparameters are fit to previously-evaluated data by maximising the marginal likelihood. However, this fails to account for uncertainty in the hyperparameters themselves, leading to overconfident model predictions. This uncertainty can be accounted for by taking the Bayesian approach of marginalising out the model hyperparameters. We investigate whether a fully-Bayesian treatment of the Gaussian process hyperparameters in BO (FBBO) leads to improved optimisation performance. Since an analytic approach is intractable, we compare FBBO using three approximate inference schemes to the maximum likelihood approach, using the Expected Improvement (EI) and Upper Confidence Bound (UCB) acquisition functions paired with ARD and isotropic Matern kernels, across 15 well-known benchmark problems for 4 observational noise settings. FBBO using EI with an ARD kernel leads to the best performance in the noise-free setting, with much less difference between combinations of BO components when the noise is increased. FBBO leads to over-exploration with UCB, but is not detrimental with EI. Therefore, we recommend that FBBO using EI with an ARD kernel as the default choice for BO.
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
Bakas, Spyridon, Reyes, Mauricio, Jakab, Andras, Bauer, Stefan, Rempfler, Markus, Crimi, Alessandro, Shinohara, Russell Takeshi, Berger, Christoph, Ha, Sung Min, Rozycki, Martin, Prastawa, Marcel, Alberts, Esther, Lipkova, Jana, Freymann, John, Kirby, Justin, Bilello, Michel, Fathallah-Shaykh, Hassan, Wiest, Roland, Kirschke, Jan, Wiestler, Benedikt, Colen, Rivka, Kotrotsou, Aikaterini, Lamontagne, Pamela, Marcus, Daniel, Milchenko, Mikhail, Nazeri, Arash, Weber, Marc-Andre, Mahajan, Abhishek, Baid, Ujjwal, Kwon, Dongjin, Agarwal, Manu, Alam, Mahbubul, Albiol, Alberto, Albiol, Antonio, Alex, Varghese, Tran, Tuan Anh, Arbel, Tal, Avery, Aaron, B., Pranjal, Banerjee, Subhashis, Batchelder, Thomas, Batmanghelich, Kayhan, Battistella, Enzo, Bendszus, Martin, Benson, Eze, Bernal, Jose, Biros, George, Cabezas, Mariano, Chandra, Siddhartha, Chang, Yi-Ju, Chazalon, Joseph, Chen, Shengcong, Chen, Wei, Chen, Jefferson, Cheng, Kun, Christoph, Meinel, Chylla, Roger, Clérigues, Albert, Costa, Anthony, Cui, Xiaomeng, Dai, Zhenzhen, Dai, Lutao, Deutsch, Eric, Ding, Changxing, Dong, Chao, Dudzik, Wojciech, Estienne, Théo, Shin, Hyung Eun, Everson, Richard, Fabrizio, Jonathan, Fang, Longwei, Feng, Xue, Fidon, Lucas, Fridman, Naomi, Fu, Huan, Fuentes, David, Gering, David G, Gao, Yaozong, Gates, Evan, Gholami, Amir, Gong, Mingming, González-Villá, Sandra, Pauloski, J. Gregory, Guan, Yuanfang, Guo, Sheng, Gupta, Sudeep, Thakur, Meenakshi H, Maier-Hein, Klaus H., Han, Woo-Sup, He, Huiguang, Hernández-Sabaté, Aura, Herrmann, Evelyn, Himthani, Naveen, Hsu, Winston, Hsu, Cheyu, Hu, Xiaojun, Hu, Xiaobin, Hu, Yan, Hu, Yifan, Hua, Rui, Huang, Teng-Yi, Huang, Weilin, Huo, Quan, HV, Vivek, Isensee, Fabian, Islam, Mobarakol, Albiol, Francisco J., Wang, Chiatse J., Jambawalikar, Sachin, Jose, V Jeya Maria, Jian, Weijian, Jin, Peter, Jungo, Alain, Nuechterlein, Nicholas K, Kao, Po-Yu, Kermi, Adel, Keutzer, Kurt, Khened, Mahendra, Kickingereder, Philipp, King, Nik, Knapp, Haley, Knecht, Urspeter, Kohli, Lisa, Kong, Deren, Kong, Xiangmao, Koppers, Simon, Kori, Avinash, Krishnamurthi, Ganapathy, Kumar, Piyush, Kushibar, Kaisar, Lachinov, Dmitrii, Lee, Joon, Lee, Chengen, Lee, Yuehchou, Lefkovits, Szidonia, Lefkovits, Laszlo, Li, Tengfei, Li, Hongwei, Li, Wenqi, Li, Hongyang, Li, Xiaochuan, Lin, Zheng-Shen, Lin, Fengming, Liu, Chang, Liu, Boqiang, Liu, Xiang, Liu, Mingyuan, Liu, Ju, Lladó, Xavier, Luo, Lin, Iftekharuddin, Khan M., Tsai, Yuhsiang M., Ma, Jun, Ma, Kai, Mackie, Thomas, Mahmoudi, Issam, Marcinkiewicz, Michal, McKinley, Richard, Mehta, Sachin, Mehta, Raghav, Meier, Raphael, Merhof, Dorit, Meyer, Craig, Mitra, Sushmita, Moiyadi, Aliasgar, Mrukwa, Grzegorz, Monteiro, Miguel A. B., Myronenko, Andriy, Carver, Eric N, Nalepa, Jakub, Ngo, Thuyen, Niu, Chen, Oermann, Eric, Oliveira, Arlindo, Oliver, Arnau, Ourselin, Sebastien, French, Andrew P., Pound, Michael P., Pridmore, Tony P., Serrano-Rubio, Juan Pablo, Paragios, Nikos, Paschke, Brad, Pei, Linmim, Peng, Suting, Pham, Bao, Piella, Gemma, Pillai, G. N., Piraud, Marie, Popli, Anmol, Prčkovska, Vesna, Puch, Santi, Puybareau, Élodie, Qiao, Xu, Suter, Yannick R, Scott, Matthew R., Rane, Swapnil, Rebsamen, Michael, Ren, Hongliang, Ren, Xuhua, Rezaei, Mina, Lorenzo, Pablo Ribalta, Rippel, Oliver, Robert, Charlotte, Choudhury, Ahana Roy, Jackson, Aaron S., Manjunath, B. S., Salem, Mostafa, Salvi, Joaquim, Sánchez, Irina, Schellingerhout, Dawid, Shboul, Zeina, Shen, Haipeng, Shen, Dinggang, Shenoy, Varun, Shi, Feng, Shu, Hai, Snyder, James, Han, Il Song, Soni, Mehul, Stawiaski, Jean, Subramanian, Shashank, Sun, Li, Sun, Roger, Sun, Jiawei, Sun, Kay, Sun, Yu, Sun, Guoxia, Sun, Shuang, Park, Moo Sung, Szilagyi, Laszlo, Talbar, Sanjay, Tao, Dacheng, Tao, Dacheng, Khadir, Mohamed Tarek, Thakur, Siddhesh, Tochon, Guillaume, Tran, Tuan, Tseng, Kuan-Lun, Turlapov, Vadim, Tustison, Nicholas, Shankar, B. Uma, Vakalopoulou, Maria, Valverde, Sergi, Vanguri, Rami, Vasiliev, Evgeny, Vercauteren, Tom, Vidyaratne, Lasitha, Vivekanandan, Ajeet, Wang, Guotai, Wang, Qian, Wang, Weichung, Wen, Ning, Wen, Xin, Weninger, Leon, Wick, Wolfgang, Wu, Shaocheng, Wu, Qiang, Xia, Yong, Xu, Yanwu, Xu, Xiaowen, Xu, Peiyuan, Yang, Tsai-Ling, Yang, Xiaoping, Yang, Hao-Yu, Yang, Junlin, Yang, Haojin, Yao, Hongdou, Young-Moxon, Brett, Yue, Xiangyu, Zhang, Songtao, Zhang, Angela, Zhang, Kun, Zhang, Xuejie, Zhang, Lichi, Zhang, Xiaoyue, Zhao, Sicheng, Zhao, Yu, Zheng, Yefeng, Zhong, Liming, Zhou, Chenhong, Zhou, Xiaobing, Zhu, Hongtu, Zong, Weiwei, Kalpathy-Cramer, Jayashree, Farahani, Keyvan, Davatzikos, Christos, van Leemput, Koen, Menze, Bjoern
Gliomas are the most common primary brain malignancies, with different degrees of aggressiveness, variable prognosis and various heterogeneous histologic sub-regions, i.e., peritumoral edematous/invaded tissue, necrotic core, active and non-enhancing core. This intrinsic heterogeneity is also portrayed in their radio-phenotype, as their sub-regions are depicted by varying intensity profiles disseminated across multi-parametric magnetic resonance imaging (mpMRI) scans, reflecting varying biological properties. Their heterogeneous shape, extent, and location are some of the factors that make these tumors difficult to resect, and in some cases inoperable. The amount of resected tumor is a factor also considered in longitudinal scans, when evaluating the apparent tumor for potential diagnosis of progression. Furthermore, there is mounting evidence that accurate segmentation of the various tumor sub-regions can offer the basis for quantitative image analysis towards prediction of patient overall survival. This study assesses the state-of-the-art machine learning (ML) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e. 2012-2018. Specifically, we focus on i) evaluating segmentations of the various glioma sub-regions in pre-operative mpMRI scans, ii) assessing potential tumor progression by virtue of longitudinal growth of tumor sub-regions, beyond use of the RECIST criteria, and iii) predicting the overall survival from pre-operative mpMRI scans of patients that undergone gross total resection. Finally, we investigate the challenge of identifying the best ML algorithms for each of these tasks, considering that apart from being diverse on each instance of the challenge, the multi-institutional mpMRI BraTS dataset has also been a continuously evolving/growing dataset.