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Collaborating Authors

 Chiang, Michael


POPE: Post Optimization Posterior Evaluation of Likelihood Free Models

arXiv.org Machine Learning

In many domains, scientists build complex simulators of natural phenomena that encode their hypotheses about the underlying processes. These simulators can be deterministic or stochastic, fast or slow, constrained or unconstrained, and so on. Optimizing the simulators with respect to a set of parameter values is common practice, resulting in a single parameter setting that minimizes an objective subject to constraints. We propose a post optimization posterior analysis that computes and visualizes all the models that can generate equally good or better simulation results, subject to constraints. These optimization posteriors are desirable for a number of reasons among which easy interpretability, automatic parameter sensitivity and correlation analysis and posterior predictive analysis. We develop a new sampling framework based on approximate Bayesian computation (ABC) with one-sided kernels. In collaboration with two groups of scientists we applied POPE to two important biological simulators: a fast and stochastic simulator of stem-cell cycling and a slow and deterministic simulator of tumor growth patterns.


A Search Algorithm for Latent Variable Models with Unbounded Domains

AAAI Conferences

This paper concerns learning and prediction with probabilistic models where the domain sizes of latent variables have no a priori upper-bound. Current approaches represent prior distributions over latent variables by stochastic processes such as the Dirichlet process, and rely on Monte Carlo sampling to estimate the model from data. We propose an alternative approach that searches over the domain size of latent variables, and allows arbitrary priors over the their domain sizes. We prove error bounds for expected probabilities, where the error bounds diminish with increasing search scope. The search algorithm can be truncated at any time . We empirically demonstrate the approach for topic modelling of text documents.