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Collaborating Authors

 Cheng, Yuxuan


A4-Unet: Deformable Multi-Scale Attention Network for Brain Tumor Segmentation

arXiv.org Artificial Intelligence

Brain tumor segmentation models have aided diagnosis in recent years. However, they face MRI complexity and variability challenges, including irregular shapes and unclear boundaries, leading to noise, misclassification, and incomplete segmentation, thereby limiting accuracy. To address these issues, we adhere to an outstanding Convolutional Neural Networks (CNNs) design paradigm and propose a novel network named A4-Unet. In A4-Unet, Deformable Large Kernel Attention (DLKA) is incorporated in the encoder, allowing for improved capture of multi-scale tumors. Swin Spatial Pyramid Pooling (SSPP) with cross-channel attention is employed in a bottleneck further to study long-distance dependencies within images and channel relationships. To enhance accuracy, a Combined Attention Module (CAM) with Discrete Cosine Transform (DCT) orthogonality for channel weighting and convolutional element-wise multiplication is introduced for spatial weighting in the decoder. Attention gates (AG) are added in the skip connection to highlight the foreground while suppressing irrelevant background information. The proposed network is evaluated on three authoritative MRI brain tumor benchmarks and a proprietary dataset, and it achieves a 94.4% Dice score on the BraTS 2020 dataset, thereby establishing multiple new state-of-the-art benchmarks. The code is available here: https://github.com/WendyWAAAAANG/A4-Unet.


Toward a Team of AI-made Scientists for Scientific Discovery from Gene Expression Data

arXiv.org Artificial Intelligence

Machine learning has emerged as a powerful tool for scientific discovery, enabling researchers to extract meaningful insights from complex datasets. For instance, it has facilitated the identification of disease-predictive genes from gene expression data, significantly advancing healthcare. However, the traditional process for analyzing such datasets demands substantial human effort and expertise for the data selection, processing, and analysis. To address this challenge, we introduce a novel framework, a Team of AI-made Scientists (TAIS), designed to streamline the scientific discovery pipeline. TAIS comprises simulated roles, including a project manager, data engineer, and domain expert, each represented by a Large Language Model (LLM). These roles collaborate to replicate the tasks typically performed by data scientists, with a specific focus on identifying disease-predictive genes. Furthermore, we have curated a benchmark dataset to assess TAIS's effectiveness in gene identification, demonstrating our system's potential to significantly enhance the efficiency and scope of scientific exploration. Our findings represent a solid step towards automating scientific discovery through large language models.