With the rapid advancements in large language model (LLM) technology and the emergence of bioinformatics-specific language models (BioLMs), there is a growing need for a comprehensive analysis of the current landscape, computational characteristics, and diverse applications. This survey aims to address this need by providing a thorough review of BioLMs, focusing on their evolution, classification, and distinguishing features, alongside a detailed examination of training methodologies, datasets, and evaluation frameworks. We explore the wide-ranging applications of BioLMs in critical areas such as disease diagnosis, drug discovery, and vaccine development, highlighting their impact and transformative potential in bioinformatics. We identify key challenges and limitations inherent in BioLMs, including data privacy and security concerns, interpretability issues, biases in training data and model outputs, and domain adaptation complexities. Finally, we highlight emerging trends and future directions, offering valuable insights to guide researchers and clinicians toward advancing BioLMs for increasingly sophisticated biological and clinical applications.

Large language models (LLMs) excel in various tasks but remain vulnerable to jailbreak attacks, where adversaries manipulate prompts to generate harmful outputs. Examining jailbreak prompts helps uncover the shortcomings of LLMs. However, current jailbreak methods and the target model's defenses are engaged in an independent and adversarial process, resulting in the need for frequent attack iterations and redesigning attacks for different models. To address these gaps, we propose a Reverse Embedded Defense Attack (REDA) mechanism that disguises the attack intention as the "defense". intention against harmful content. Specifically, REDA starts from the target response, guiding the model to embed harmful content within its defensive measures, thereby relegating harmful content to a secondary role and making the model believe it is performing a defensive task. The attacking model considers that it is guiding the target model to deal with harmful content, while the target model thinks it is performing a defensive task, creating an illusion of cooperation between the two. Additionally, to enhance the model's confidence and guidance in "defensive" intentions, we adopt in-context learning (ICL) with a small number of attack examples and construct a corresponding dataset of attack examples. Extensive evaluations demonstrate that the REDA method enables cross-model attacks without the need to redesign attack strategies for different models, enables successful jailbreak in one iteration, and outperforms existing methods on both open-source and closed-source models.

Importance and Endangerment of Low-Resource Languages in the Global Linguistic Ecology The linguistic landscape of the world constitutes a complex tapestry interwoven with a rich diversity of languages, each strand epitomizing a distinctive cultural, historical, and social identity. This global linguistic diversity forms a foundational pillar of human civilization, cultivating an array of perspectives and worldviews that enhance our collective intellectual legacy. Among these, low-resource languages occupy a particularly crucial position, not merely as modes of communication but as repositories of distinctive cultural knowledge, historical narratives, and worldviews. These languages, frequently spoken by smaller communities, are essential to the preservation of cultural heritage and the transmission of indigenous knowledge systems. However, the global linguistic landscape is presently undergoing an extraordinary crisis, with lowresource languages among the most threatened. The swift vanishing of these languages is of serious concern, highlighted by concerning data and studies. It is estimated, for example, that around 40% of the world's 7,000 languages face extinction, with numerous low-resource languages having fewer than 1,000 speakers [94].

Recent studies show that large language models (LLMs) are powerful tools for working with natural language, bringing advances in many areas of computational linguistics. However, these models face challenges when applied to low-resource languages due to limited training data and difficulty in understanding cultural nuances. In this paper, we propose QueEn, a novel approach for Quechua-English translation that combines Retrieval-Augmented Generation (RAG) with parameter-efficient fine-tuning techniques. Our method leverages external linguistic resources through RAG and uses Low-Rank Adaptation (LoRA) for efficient model adaptation. Experimental results show that our approach substantially exceeds baseline models, with a BLEU score of 17.6 compared to 1.5 for standard GPT models. The integration of RAG with fine-tuning allows our system to address the challenges of low-resource language translation while maintaining computational efficiency. This work contributes to the broader goal of preserving endangered languages through advanced language technologies.

Large Language Models (LLMs) have demonstrated remarkable success across a wide range of tasks and domains. However, their performance in low-resource language translation, particularly when translating into these languages, remains underexplored. This gap poses significant challenges, as linguistic barriers hinder the cultural preservation and development of minority communities. To address this issue, this paper introduces a novel retrieval-based method that enhances translation quality for low-resource languages by focusing on key terms, which involves translating keywords and retrieving corresponding examples from existing data. To evaluate the effectiveness of this method, we conducted experiments translating from English into three low-resource languages: Cherokee, a critically endangered indigenous language of North America; Tibetan, a historically and culturally significant language in Asia; and Manchu, a language with few remaining speakers. Our comparison with the zero-shot performance of GPT-4o and LLaMA 3.1 405B, highlights the significant challenges these models face when translating into low-resource languages. In contrast, our retrieval-based method shows promise in improving both word-level accuracy and overall semantic understanding by leveraging existing resources more effectively.

Artificial Intelligence (AI) has become essential in modern healthcare, with large language models (LLMs) offering promising advances in clinical decision-making. Traditional model-based approaches, including those leveraging in-context demonstrations and those with specialized medical fine-tuning, have demonstrated strong performance in medical language processing but struggle with real-time adaptability, multi-step reasoning, and handling complex medical tasks. Agent-based AI systems address these limitations by incorporating reasoning traces, tool selection based on context, knowledge retrieval, and both short- and long-term memory. These additional features enable the medical AI agent to handle complex medical scenarios where decision-making should be built on real-time interaction with the environment. Therefore, unlike conventional model-based approaches that treat medical queries as isolated questions, medical AI agents approach them as complex tasks and behave more like human doctors. In this paper, we study the choice of the backbone LLM for medical AI agents, which is the foundation for the agent's overall reasoning and action generation. In particular, we consider the emergent o1 model and examine its impact on agents' reasoning, tool-use adaptability, and real-time information retrieval across diverse clinical scenarios, including high-stakes settings such as intensive care units (ICUs). Our findings demonstrate o1's ability to enhance diagnostic accuracy and consistency, paving the way for smarter, more responsive AI tools that support better patient outcomes and decision-making efficacy in clinical practice.

In this paper, we review legal testing methods based on Large Language Models (LLMs), using the OPENAI o1 model as a case study to evaluate the performance of large models in applying legal provisions. We compare current state-of-the-art LLMs, including open-source, closed-source, and legal-specific models trained specifically for the legal domain. Systematic tests are conducted on English and Chinese legal cases, and the results are analyzed in depth. Through systematic testing of legal cases from common law systems and China, this paper explores the strengths and weaknesses of LLMs in understanding and applying legal texts, reasoning through legal issues, and predicting judgments. The experimental results highlight both the potential and limitations of LLMs in legal applications, particularly in terms of challenges related to the interpretation of legal language and the accuracy of legal reasoning. Finally, the paper provides a comprehensive analysis of the advantages and disadvantages of various types of models, offering valuable insights and references for the future application of AI in the legal field.

Neuromorphic computing has emerged as a promising energy-efficient alternative to traditional artificial intelligence, predominantly utilizing spiking neural networks (SNNs) implemented on neuromorphic hardware. Significant advancements have been made in SNN-based convolutional neural networks (CNNs) and Transformer architectures. However, neuromorphic computing for the medical imaging domain remains underexplored. In this study, we introduce EG-SpikeFormer, an SNN architecture tailored for clinical tasks that incorporates eye-gaze data to guide the model's attention to the diagnostically relevant regions in medical images. Our developed approach effectively addresses shortcut learning issues commonly observed in conventional models, especially in scenarios with limited clinical data and high demands for model reliability, generalizability, and transparency. Our EG-SpikeFormer not only demonstrates superior energy efficiency and performance in medical image prediction tasks but also enhances clinical relevance through multi-modal information alignment. By incorporating eye-gaze data, the model improves interpretability and generalization, opening new directions for applying neuromorphic computing in healthcare.

This comprehensive study evaluates the performance of OpenAI's o1-preview large language model across a diverse array of complex reasoning tasks, spanning multiple domains, including computer science, mathematics, natural sciences, medicine, linguistics, and social sciences. Through rigorous testing, o1-preview demonstrated remarkable capabilities, often achieving human-level or superior performance in areas ranging from coding challenges to scientific reasoning and from language processing to creative problem-solving. Key findings include: -83.3% success rate in solving complex competitive programming problems, surpassing many human experts. -Superior ability in generating coherent and accurate radiology reports, outperforming other evaluated models. -100% accuracy in high school-level mathematical reasoning tasks, providing detailed step-by-step solutions. -Advanced natural language inference capabilities across general and specialized domains like medicine. -Impressive performance in chip design tasks, outperforming specialized models in areas such as EDA script generation and bug analysis. -Remarkable proficiency in anthropology and geology, demonstrating deep understanding and reasoning in these specialized fields. -Strong capabilities in quantitative investing. O1 has comprehensive financial knowledge and statistical modeling skills. -Effective performance in social media analysis, including sentiment analysis and emotion recognition. The model excelled particularly in tasks requiring intricate reasoning and knowledge integration across various fields. While some limitations were observed, including occasional errors on simpler problems and challenges with certain highly specialized concepts, the overall results indicate significant progress towards artificial general intelligence.

Recently advancements in large multimodal models have led to significant strides in image comprehension capabilities. Despite these advancements, there is a lack of the robust benchmark specifically for assessing the Image-to-Web conversion proficiency of these large models. Primarily, it is essential to ensure the integrity of the web elements generated. These elements comprise visible and invisible categories. Previous evaluation methods (e.g., BLEU) are notably susceptible to significant alterations due to the presence of invisible elements in Web. Furthermore, it is crucial to measure the layout information of web pages, referring to the positional relationships between elements, which is overlooked by previous work. To address challenges, we have curated and aligned a benchmark of images and corresponding web codes (IW-Bench). Specifically, we propose the Element Accuracy, which tests the completeness of the elements by parsing the Document Object Model (DOM) tree. Layout Accuracy is also proposed to analyze the positional relationships of elements by converting DOM tree into a common subsequence. Besides, we design a five-hop multimodal Chain-of-Thought Prompting for better performance, which contains five hop: 1) SoM prompt injection. 2) Inferring Elements. 3) Inferring Layout. 4) Inferring Web code. 5) Reflection. Our benchmark comprises 1200 pairs of images and web codes with varying levels of difficulty. We have conducted extensive experiments on existing large multimodal models, offering insights into their performance and areas for improvement in image-to-web domain.