Efficiently identifying sleep stages is crucial for unraveling the intricacies of sleep in both preclinical and clinical research. The labor-intensive nature of manual sleep scoring, demanding substantial expertise, has prompted a surge of interest in automated alternatives. Sleep studies in mice play a significant role in understanding sleep patterns and disorders and underscore the need for robust scoring methodologies. In response, this study introduces LG-Sleep, a novel subject-independent deep neural network architecture designed for mice sleep scoring through electroencephalogram (EEG) signals. LG-Sleep extracts local and global temporal transitions within EEG signals to categorize sleep data into three stages: wake, rapid eye movement (REM) sleep, and non-rapid eye movement (NREM) sleep. The model leverages local and global temporal information by employing time-distributed convolutional neural networks to discern local temporal transitions in EEG data. Subsequently, features derived from the convolutional filters traverse long short-term memory blocks, capturing global transitions over extended periods. Crucially, the model is optimized in an autoencoder-decoder fashion, facilitating generalization across distinct subjects and adapting to limited training samples. Experimental findings demonstrate superior performance of LG-Sleep compared to conventional deep neural networks. Moreover, the model exhibits good performance across different sleep stages even when tasked with scoring based on limited training samples.

Ptychography is a scanning coherent diffractive imaging technique that enables imaging nanometer-scale features in extended samples. One main challenge is that widely used iterative image reconstruction methods often require significant amount of overlap between adjacent scan locations, leading to large data volumes and prolonged acquisition times. To address this key limitation, this paper proposes a Bayesian inversion method for ptychography that performs effectively even with less overlap between neighboring scan locations. Furthermore, the proposed method can quantify the inherent uncertainty on the ptychographic object, which is created by the ill-posed nature of the ptychographic inverse problem. At a high level, the proposed method first utilizes a deep generative model to learn the prior distribution of the object and then generates samples from the posterior distribution of the object by using a Markov Chain Monte Carlo algorithm. Our results from simulated ptychography experiments show that the proposed framework can consistently outperform a widely used iterative reconstruction algorithm in cases of reduced overlap. Moreover, the proposed framework can provide uncertainty estimates that closely correlate with the true error, which is not available in practice. The project website is available here.

Automated emotion recognition using electroencephalogram (EEG) signals has gained substantial attention. Although deep learning approaches exhibit strong performance, they often suffer from vulnerabilities to various perturbations, like environmental noise and adversarial attacks. In this paper, we propose an Inception feature generator and two-sided perturbation (INC-TSP) approach to enhance emotion recognition in brain-computer interfaces. INC-TSP integrates the Inception module for EEG data analysis and employs two-sided perturbation (TSP) as a defensive mechanism against input perturbations. TSP introduces worst-case perturbations to the model's weights and inputs, reinforcing the model's elasticity against adversarial attacks. The proposed approach addresses the challenge of maintaining accurate emotion recognition in the presence of input uncertainties. We validate INC-TSP in a subject-independent three-class emotion recognition scenario, demonstrating robust performance.

Motor imagery (MI) classification based on electroencephalogram (EEG) is a widely-used technique in non-invasive brain-computer interface (BCI) systems. Since EEG recordings suffer from heterogeneity across subjects and labeled data insufficiency, designing a classifier that performs the MI independently from the subject with limited labeled samples would be desirable. To overcome these limitations, we propose a novel subject-independent semi-supervised deep architecture (SSDA). The proposed SSDA consists of two parts: an unsupervised and a supervised element. The training set contains both labeled and unlabeled data samples from multiple subjects. First, the unsupervised part, known as the columnar spatiotemporal auto-encoder (CST-AE), extracts latent features from all the training samples by maximizing the similarity between the original and reconstructed data. A dimensional scaling approach is employed to reduce the dimensionality of the representations while preserving their discriminability. Second, a supervised part learns a classifier based on the labeled training samples using the latent features acquired in the unsupervised part. Moreover, we employ center loss in the supervised part to minimize the embedding space distance of each point in a class to its center. The model optimizes both parts of the network in an end-to-end fashion. The performance of the proposed SSDA is evaluated on test subjects who were not seen by the model during the training phase. To assess the performance, we use two benchmark EEG-based MI task datasets. The results demonstrate that SSDA outperforms state-of-the-art methods and that a small number of labeled training samples can be sufficient for strong classification performance.

Deep learning approaches have been applied widely in Although deep learning-based algorithms have demonstrated this domain to find the features that can discriminate the emotional excellent performance in automated emotion recognition via states [4]. EEGNet [5] and ConvNet [4] are two convolutional electroencephalogram (EEG) signals, variations across brain neural networks (CNN) based architectures that signal patterns of individuals can diminish the model's effectiveness showed great performance. Alongside the spatial information, when applied across different subjects. While transfer the temporal dependencies can also boost the model's learning techniques have exhibited promising outcomes, performance. One approach is using CNN and long-shortterm they still encounter challenges related to inadequate feature memory (LSTM) networks to capture the spatial and representations and may overlook the fact that source subjects temporal features [6]. Transformers (TF) are also utilized themselves can possess distinct characteristics. In this work, to capture the long-term dependencies [7]. However, there we propose a multi-source domain adaptation approach with is still room to find a network that can extract discriminative a transformer-based feature generator (MSDA-TF) designed features across different subjects.

Recently, physiological data such as electroencephalography (EEG) signals have attracted significant attention in affective computing. In this context, the main goal is to design an automated model that can assess emotional states. Lately, deep neural networks have shown promising performance in emotion recognition tasks. However, designing a deep architecture that can extract practical information from raw data is still a challenge. Here, we introduce a deep neural network that acquires interpretable physiological representations by a hybrid structure of spatio-temporal encoding and recurrent attention network blocks. Furthermore, a preprocessing step is applied to the raw data using graph signal processing tools to perform graph smoothing in the spatial domain. We demonstrate that our proposed architecture exceeds state-of-the-art results for emotion classification on the publicly available DEAP dataset. To explore the generality of the learned model, we also evaluate the performance of our architecture towards transfer learning (TL) by transferring the model parameters from a specific source to other target domains. Using DEAP as the source dataset, we demonstrate the effectiveness of our model in performing cross-modality TL and improving emotion classification accuracy on DREAMER and the Emotional English Word (EEWD) datasets, which involve EEG-based emotion classification tasks with different stimuli.

Deep unrolling is an emerging deep learning-based image reconstruction methodology that bridges the gap between model-based and purely deep learning-based image reconstruction methods. Although deep unrolling methods achieve state-of-the-art performance for imaging problems and allow the incorporation of the observation model into the reconstruction process, they do not provide any uncertainty information about the reconstructed image, which severely limits their use in practice, especially for safety-critical imaging applications. In this paper, we propose a learning-based image reconstruction framework that incorporates the observation model into the reconstruction task and that is capable of quantifying epistemic and aleatoric uncertainties, based on deep unrolling and Bayesian neural networks. We demonstrate the uncertainty characterization capability of the proposed framework on magnetic resonance imaging and computed tomography reconstruction problems. We investigate the characteristics of the epistemic and aleatoric uncertainty information provided by the proposed framework to motivate future research on utilizing uncertainty information to develop more accurate, robust, trustworthy, uncertainty-aware, learning-based image reconstruction and analysis methods for imaging problems. We show that the proposed framework can provide uncertainty information while achieving comparable reconstruction performance to state-of-the-art deep unrolling methods.

Resting-state brain networks represent the intrinsic state of the brain during the majority of cognitive and sensorimotor tasks. However, no study has yet presented concise predictors of task-induced vigilance variability from spectrospatial features of the pre-task, resting-state electroencephalograms (EEG). We asked ten healthy volunteers (6 females, 4 males) to participate in 105-minute fixed-sequence-varying-duration sessions of sustained attention to response task (SART). A novel and adaptive vigilance scoring scheme was designed based on the performance and response time in consecutive trials, and demonstrated large inter-participant variability in terms of maintaining consistent tonic performance. Multiple linear regression using feature relevance analysis obtained significant predictors of the mean cumulative vigilance score (CVS), mean response time, and variabilities of these scores from the resting-state, band-power ratios of EEG signals, p<0.05. Single-layer neural networks trained with cross-validation also captured different associations for the beta sub-bands. Increase in the gamma (28-48 Hz) and upper beta ratios from the left central and temporal regions predicted slower reactions and more inconsistent vigilance as explained by the increased activation of default mode network (DMN) and differences between the high- and low-attention networks at temporal regions. Higher ratios of parietal alpha from the Brodmann's areas 18, 19, and 37 during the eyes-open states predicted slower responses but more consistent CVS and reactions associated with the superior ability in vigilance maintenance. The proposed framework and these findings on the most stable and significant attention predictors from the intrinsic EEG power ratios can be used to model attention variations during the calibration sessions of BCI applications and vigilance monitoring systems.

Data driven segmentation is an important initial step of shape prior-based segmentation methods since it is assumed that the data term brings a curve to a plausible level so that shape and data terms can then work together to produce better segmentations. When purely data driven segmentation produces poor results, the final segmentation is generally affected adversely. One challenge faced by many existing data terms is due to the fact that they consider only pixel intensities to decide whether to assign a pixel to the foreground or to the background region. When the distributions of the foreground and background pixel intensities have significant overlap, such data terms become ineffective, as they produce uncertain results for many pixels in a test image. In such cases, using prior information about the spatial context of the object to be segmented together with the data term can bring a curve to a plausible stage, which would then serve as a good initial point to launch shape-based segmentation. In this paper, we propose a new segmentation approach that combines nonparametric context priors with a learned-intensity-based data term and nonparametric shape priors. We perform experiments for dendritic spine segmentation in both 2D and 3D 2-photon microscopy images. The experimental results demonstrate that using spatial context priors leads to significant improvements.