Basak, Promit
Machine-agnostic Automated Lumbar MRI Segmentation using a Cascaded Model Based on Generative Neurons
Basak, Promit, Sarmun, Rusab, Kabir, Saidul, Al-Hashimi, Israa, Bhuiyan, Enamul Hoque, Hasan, Anwarul, Khan, Muhammad Salman, Chowdhury, Muhammad E. H.
Automated lumbar spine segmentation is very crucial for modern diagnosis systems. In this study, we introduce a novel machine-agnostic approach for segmenting lumbar vertebrae and intervertebral discs from MRI images, employing a cascaded model that synergizes an ROI detection and a Self-organized Operational Neural Network (Self-ONN)-based encoder-decoder network for segmentation. Addressing the challenge of diverse MRI modalities, our methodology capitalizes on a unique dataset comprising images from 12 scanners and 34 subjects, enhanced through strategic preprocessing and data augmentation techniques. The YOLOv8 medium model excels in ROI extraction, achieving an excellent performance of 0.916 mAP score. Significantly, our Self-ONN-based model, combined with a DenseNet121 encoder, demonstrates excellent performance in lumbar vertebrae and IVD segmentation with a mean Intersection over Union (IoU) of 83.66%, a sensitivity of 91.44%, and Dice Similarity Coefficient (DSC) of 91.03%, as validated through rigorous 10-fold cross-validation. This study not only showcases an effective approach to MRI segmentation in spine-related disorders but also sets the stage for future advancements in automated diagnostic tools, emphasizing the need for further dataset expansion and model refinement for broader clinical applicability.
A Novel Deep Learning Technique for Morphology Preserved Fetal ECG Extraction from Mother ECG using 1D-CycleGAN
Basak, Promit, Sakib, A. H. M Nazmus, Chowdhury, Muhammad E. H., Al-Emadi, Nasser, Yalcin, Huseyin Cagatay, Pedersen, Shona, Mahmud, Sakib, Kiranyaz, Serkan, Al-Maadeed, Somaya
Monitoring the electrical pulse of fetal heart through a non-invasive fetal electrocardiogram (fECG) can easily detect abnormalities in the developing heart to significantly reduce the infant mortality rate and post-natal complications. Due to the overlapping of maternal and fetal R-peaks, the low amplitude of the fECG, systematic and ambient noises, typical signal extraction methods, such as adaptive filters, independent component analysis, empirical mode decomposition, etc., are unable to produce satisfactory fECG. While some techniques can produce accurate QRS waves, they often ignore other important aspects of the ECG. Our approach, which is based on 1D CycleGAN, can reconstruct the fECG signal from the mECG signal while maintaining the morphology due to extensive preprocessing and appropriate framework. The performance of our solution was evaluated by combining two available datasets from Physionet, "Abdominal and Direct Fetal ECG Database" and "Fetal electrocardiograms, direct and abdominal with reference heartbeat annotations", where it achieved an average PCC and Spectral-Correlation score of 88.4% and 89.4%, respectively. It detects the fQRS of the signal with accuracy, precision, recall and F1 score of 92.6%, 97.6%, 94.8% and 96.4%, respectively. It can also accurately produce the estimation of fetal heart rate and R-R interval with an error of 0.25% and 0.27%, respectively. The main contribution of our work is that, unlike similar studies, it can retain the morphology of the ECG signal with high fidelity. The accuracy of our solution for fetal heart rate and R-R interval length is comparable to existing state-of-the-art techniques. This makes it a highly effective tool for early diagnosis of fetal heart diseases and regular health checkups of the fetus.
Can Ensemble of Classifiers Provide Better Recognition Results in Packaging Activity?
Sakib, A. H. M. Nazmus, Basak, Promit, Uddin, Syed Doha, Tasin, Shahamat Mustavi, Ahad, Md Atiqur Rahman
Skeleton-based Motion Capture (MoCap) systems have been widely used in the game and film industry for mimicking complex human actions for a long time. MoCap data has also proved its effectiveness in human activity recognition tasks. However, it is a quite challenging task for smaller datasets. The lack of such data for industrial activities further adds to the difficulties. In this work, we have proposed an ensemble-based machine learning methodology that is targeted to work better on MoCap datasets. The experiments have been performed on the MoCap data given in the Bento Packaging Activity Recognition Challenge 2021. Bento is a Japanese word that resembles lunch-box. Upon processing the raw MoCap data at first, we have achieved an astonishing accuracy of 98% on 10-fold Cross-Validation and 82% on Leave-One-Out-Cross-Validation by using the proposed ensemble model.