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 Bai, Long


Can DeepSeek Reason Like a Surgeon? An Empirical Evaluation for Vision-Language Understanding in Robotic-Assisted Surgery

arXiv.org Artificial Intelligence

The DeepSeek models have shown exceptional performance in general scene understanding, question-answering (QA), and text generation tasks, owing to their efficient training paradigm and strong reasoning capabilities. In this study, we investigate the dialogue capabilities of the DeepSeek model in robotic surgery scenarios, focusing on tasks such as Single Phrase QA, Visual QA, and Detailed Description. The Single Phrase QA tasks further include sub-tasks such as surgical instrument recognition, action understanding, and spatial position analysis. We conduct extensive evaluations using publicly available datasets, including EndoVis18 and CholecT50, along with their corresponding dialogue data. Our empirical study shows that, compared to existing general-purpose multimodal large language models, DeepSeek-VL2 performs better on complex understanding tasks in surgical scenes. Additionally, although DeepSeek-V3 is purely a language model, we find that when image tokens are directly inputted, the model demonstrates better performance on single-sentence QA tasks. However, overall, the DeepSeek models still fall short of meeting the clinical requirements for understanding surgical scenes. Under general prompts, DeepSeek models lack the ability to effectively analyze global surgical concepts and fail to provide detailed insights into surgical scenarios. Based on our observations, we argue that the DeepSeek models are not ready for vision-language tasks in surgical contexts without fine-tuning on surgery-specific datasets.


Towards Robust Universal Information Extraction: Benchmark, Evaluation, and Solution

arXiv.org Artificial Intelligence

In this paper, we aim to enhance the robustness of Universal Information Extraction (UIE) by introducing a new benchmark dataset, a comprehensive evaluation, and a feasible solution. Existing robust benchmark datasets have two key limitations: 1) They generate only a limited range of perturbations for a single Information Extraction (IE) task, which fails to evaluate the robustness of UIE models effectively; 2) They rely on small models or handcrafted rules to generate perturbations, often resulting in unnatural adversarial examples. Considering the powerful generation capabilities of Large Language Models (LLMs), we introduce a new benchmark dataset for Robust UIE, called RUIE-Bench, which utilizes LLMs to generate more diverse and realistic perturbations across different IE tasks. Based on this dataset, we comprehensively evaluate existing UIE models and reveal that both LLM-based models and other models suffer from significant performance drops. To improve robustness and reduce training costs, we propose a data-augmentation solution that dynamically selects hard samples for iterative training based on the model's inference loss. Experimental results show that training with only \textbf{15\%} of the data leads to an average \textbf{7.5\%} relative performance improvement across three IE tasks.


Advancing Dense Endoscopic Reconstruction with Gaussian Splatting-driven Surface Normal-aware Tracking and Mapping

arXiv.org Artificial Intelligence

Simultaneous Localization and Mapping (SLAM) is essential for precise surgical interventions and robotic tasks in minimally invasive procedures. While recent advancements in 3D Gaussian Splatting (3DGS) have improved SLAM with high-quality novel view synthesis and fast rendering, these systems struggle with accurate depth and surface reconstruction due to multi-view inconsistencies. Simply incorporating SLAM and 3DGS leads to mismatches between the reconstructed frames. In this work, we present Endo-2DTAM, a real-time endoscopic SLAM system with 2D Gaussian Splatting (2DGS) to address these challenges. Endo-2DTAM incorporates a surface normal-aware pipeline, which consists of tracking, mapping, and bundle adjustment modules for geometrically accurate reconstruction. Our robust tracking module combines point-to-point and point-to-plane distance metrics, while the mapping module utilizes normal consistency and depth distortion to enhance surface reconstruction quality. We also introduce a pose-consistent strategy for efficient and geometrically coherent keyframe sampling. Extensive experiments on public endoscopic datasets demonstrate that Endo-2DTAM achieves an RMSE of $1.87\pm 0.63$ mm for depth reconstruction of surgical scenes while maintaining computationally efficient tracking, high-quality visual appearance, and real-time rendering. Our code will be released at github.com/lastbasket/Endo-2DTAM.


V$^2$-SfMLearner: Learning Monocular Depth and Ego-motion for Multimodal Wireless Capsule Endoscopy

arXiv.org Artificial Intelligence

Deep learning can predict depth maps and capsule ego-motion from capsule endoscopy videos, aiding in 3D scene reconstruction and lesion localization. However, the collisions of the capsule endoscopies within the gastrointestinal tract cause vibration perturbations in the training data. Existing solutions focus solely on vision-based processing, neglecting other auxiliary signals like vibrations that could reduce noise and improve performance. Therefore, we propose V$^2$-SfMLearner, a multimodal approach integrating vibration signals into vision-based depth and capsule motion estimation for monocular capsule endoscopy. We construct a multimodal capsule endoscopy dataset containing vibration and visual signals, and our artificial intelligence solution develops an unsupervised method using vision-vibration signals, effectively eliminating vibration perturbations through multimodal learning. Specifically, we carefully design a vibration network branch and a Fourier fusion module, to detect and mitigate vibration noises. The fusion framework is compatible with popular vision-only algorithms. Extensive validation on the multimodal dataset demonstrates superior performance and robustness against vision-only algorithms. Without the need for large external equipment, our V$^2$-SfMLearner has the potential for integration into clinical capsule robots, providing real-time and dependable digestive examination tools. The findings show promise for practical implementation in clinical settings, enhancing the diagnostic capabilities of doctors.


SurgSora: Decoupled RGBD-Flow Diffusion Model for Controllable Surgical Video Generation

arXiv.org Artificial Intelligence

Medical video generation has transformative potential for enhancing surgical understanding and pathology insights through precise and controllable visual representations. However, current models face limitations in controllability and authenticity. To bridge this gap, we propose SurgSora, a motion-controllable surgical video generation framework that uses a single input frame and user-controllable motion cues. SurgSora consists of three key modules: the Dual Semantic Injector (DSI), which extracts object-relevant RGB and depth features from the input frame and integrates them with segmentation cues to capture detailed spatial features of complex anatomical structures; the Decoupled Flow Mapper (DFM), which fuses optical flow with semantic-RGB-D features at multiple scales to enhance temporal understanding and object spatial dynamics; and the Trajectory Controller (TC), which allows users to specify motion directions and estimates sparse optical flow, guiding the video generation process. The fused features are used as conditions for a frozen Stable Diffusion model to produce realistic, temporally coherent surgical videos. Extensive evaluations demonstrate that SurgSora outperforms state-of-the-art methods in controllability and authenticity, showing its potential to advance surgical video generation for medical education, training, and research. See our project page for more results: surgsora.github.io.


ETSM: Automating Dissection Trajectory Suggestion and Confidence Map-Based Safety Margin Prediction for Robot-assisted Endoscopic Submucosal Dissection

arXiv.org Artificial Intelligence

Robot-assisted Endoscopic Submucosal Dissection (ESD) improves the surgical procedure by providing a more comprehensive view through advanced robotic instruments and bimanual operation, thereby enhancing dissection efficiency and accuracy. Accurate prediction of dissection trajectories is crucial for better decision-making, reducing intraoperative errors, and improving surgical training. Nevertheless, predicting these trajectories is challenging due to variable tumor margins and dynamic visual conditions. To address this issue, we create the ESD Trajectory and Confidence Map-based Safety Margin (ETSM) dataset with $1849$ short clips, focusing on submucosal dissection with a dual-arm robotic system. We also introduce a framework that combines optimal dissection trajectory prediction with a confidence map-based safety margin, providing a more secure and intelligent decision-making tool to minimize surgical risks for ESD procedures. Additionally, we propose the Regression-based Confidence Map Prediction Network (RCMNet), which utilizes a regression approach to predict confidence maps for dissection areas, thereby delineating various levels of safety margins. We evaluate our RCMNet using three distinct experimental setups: in-domain evaluation, robustness assessment, and out-of-domain evaluation. Experimental results show that our approach excels in the confidence map-based safety margin prediction task, achieving a mean absolute error (MAE) of only $3.18$. To the best of our knowledge, this is the first study to apply a regression approach for visual guidance concerning delineating varying safety levels of dissection areas. Our approach bridges gaps in current research by improving prediction accuracy and enhancing the safety of the dissection process, showing great clinical significance in practice.


AlignXIE: Improving Multilingual Information Extraction by Cross-Lingual Alignment

arXiv.org Artificial Intelligence

Empirical evidence suggests that LLMs exhibit spontaneous cross-lingual alignment. Our findings suggest that although LLMs also demonstrate promising cross-lingual alignment in Information Extraction, there remains significant imbalance across languages, revealing an underlying deficiency in the IE alignment. To address this issue, we propose AlignXIE, a powerful code-based LLM that significantly enhances cross-lingual IE alignment through two strategies. Firstly, AlignXIE formulates IE across different languages, especially non-English ones, as code generation tasks, standardizing the representation of various schemas using Python classes to ensure consistency of the same ontology in different languages and align the schema. Secondly, it incorporates an IE cross-lingual alignment phase through a translated instance prediction task proposed in this paper to align the extraction process, utilizing ParallelNER, an IE bilingual parallel dataset with 257,190 samples, generated by our proposed LLM-based automatic pipeline for IE parallel data construction, with manual annotation to ensure quality. Ultimately, we obtain AlignXIE through multilingual IE instruction tuning. Although without training in 9 unseen languages, AlignXIE surpasses ChatGPT by $30.17\%$ and SoTA by $20.03\%$, thereby demonstrating superior cross-lingual IE capabilities. Comprehensive evaluations on 63 IE benchmarks in Chinese and English under various settings, demonstrate that AlignXIE significantly enhances cross-lingual and multilingual IE through boosting the IE alignment.


Web-based Augmented Reality with Auto-Scaling and Real-Time Head Tracking towards Markerless Neurointerventional Preoperative Planning and Training of Head-mounted Robotic Needle Insertion

arXiv.org Artificial Intelligence

Neurosurgery requires exceptional precision and comprehensive preoperative planning to ensure optimal patient outcomes. Despite technological advancements, there remains a need for intuitive, accessible tools to enhance surgical preparation and medical education in this field. Traditional methods often lack the immersive experience necessary for surgeons to visualize complex procedures and critical neurovascular structures, while existing advanced solutions may be cost-prohibitive or require specialized hardware. This research presents a novel markerless web-based augmented reality (AR) application designed to address these challenges in neurointerventional preoperative planning and education. Utilizing MediaPipe for precise facial localization and segmentation, and React Three Fiber for immersive 3D visualization, the application offers an intuitive platform for complex preoperative procedures. A virtual 2-RPS parallel positioner or Skull-Bot model is projected onto the user's face in real-time, simulating surgical tool control with high precision. Key features include the ability to import and auto-scale head anatomy to the user's dimensions and real-time auto-tracking of head movements once aligned. The web-based nature enables simultaneous access by multiple users, facilitating collaboration during surgeries and allowing medical students to observe live procedures. A pilot study involving three participants evaluated the application's auto-scaling and auto-tracking capabilities through various head rotation exercises. This research contributes to the field by offering a cost-effective, accessible, and collaborative tool for improving neurosurgical planning and education, potentially leading to better surgical outcomes and more comprehensive training for medical professionals. The source code of our application is publicly available at https://github.com/Hillllllllton/skullbot_web_ar.


EndoUIC: Promptable Diffusion Transformer for Unified Illumination Correction in Capsule Endoscopy

arXiv.org Artificial Intelligence

Wireless Capsule Endoscopy (WCE) is highly valued for its non-invasive and painless approach, though its effectiveness is compromised by uneven illumination from hardware constraints and complex internal dynamics, leading to overexposed or underexposed images. While researchers have discussed the challenges of low-light enhancement in WCE, the issue of correcting for different exposure levels remains underexplored. To tackle this, we introduce EndoUIC, a WCE unified illumination correction solution using an end-to-end promptable diffusion transformer (DiT) model. In our work, the illumination prompt module shall navigate the model to adapt to different exposure levels and perform targeted image enhancement, in which the Adaptive Prompt Integration (API) and Global Prompt Scanner (GPS) modules shall further boost the concurrent representation learning between the prompt parameters and features. Besides, the U-shaped restoration DiT model shall capture the long-range dependencies and contextual information for unified illumination restoration. Moreover, we present a novel Capsule-endoscopy Exposure Correction (CEC) dataset, including ground-truth and corrupted image pairs annotated by expert photographers. Extensive experiments against a variety of state-of-the-art (SOTA) methods on four datasets showcase the effectiveness of our proposed method and components in WCE illumination restoration, and the additional downstream experiments further demonstrate its utility for clinical diagnosis and surgical assistance.


Temporal Knowledge Graph Question Answering: A Survey

arXiv.org Artificial Intelligence

Knowledge Base Question Answering (KBQA) has been a long-standing field to answer questions based on knowledge bases. Recently, the evolving dynamics of knowledge have attracted a growing interest in Temporal Knowledge Graph Question Answering (TKGQA), an emerging task to answer temporal questions. However, this field grapples with ambiguities in defining temporal questions and lacks a systematic categorization of existing methods for TKGQA. In response, this paper provides a thorough survey from two perspectives: the taxonomy of temporal questions and the methodological categorization for TKGQA. Specifically, we first establish a detailed taxonomy of temporal questions engaged in prior studies. Subsequently, we provide a comprehensive review of TKGQA techniques of two categories: semantic parsing-based and TKG embedding-based. Building on this review, the paper outlines potential research directions aimed at advancing the field of TKGQA. This work aims to serve as a comprehensive reference for TKGQA and to stimulate further research.