Machine Learning Tool May Help Us Better Understand RNA Viruses

Although the model has yet to be used in real-life applications, in research testing it has shown at least a 10 percent improvement in structure prediction accuracy compared to previous state-of-the-art methods according to Xinshi Chen, a Georgia Tech Ph.D. student specializing in machine learning and co-developer of the new tool. "The model uses an unrolled algorithm for solving a constrained optimization as a component in the neural network architecture, so that it can directly incorporate a solution constraint, or prior knowledge, to predict the RNA base-pairing matrix," said Chen. E2Efold is not only more accurate, it is also considerably faster than current techniques. Current methods are dynamic programming based, which is a much slower approach for predicting longer RNA sequences, such as the genomic RNA in a virus. E2Efold overcomes this drawback by using a gradient-based unrolled algorithm.