New version of pqR, with automatic differentiation and arithmetic on lists

This version has preliminary implementations of automatic differentiation and of arithmetic on lists. These are both useful for gradient-based optimization, such as maximum likelihood estimation and neural network training, as well as gradient-based MCMC methods. List arithmetic is helpful when dealing with models that have several groups of parameters, which are most conveniently represented using a list of vectors or matrices, rather than a single vector. You can read the documentation on these facilities here and here. Some example programs are in this repository.