Technology
PAC-Bayes Learning of Conjunctions and Classification of Gene-Expression Data
We propose a "soft greedy" learning algorithm for building small conjunctions of simple threshold functions, called rays, defined on single real-valued attributes. We also propose a PAC-Bayes risk bound which is minimized for classifiers achieving a nontrivial tradeoff between sparsity (the number of rays used) and the magnitude of the separating margin of each ray. Finally, we test the soft greedy algorithm on four DNA micro-array data sets.
Co-Validation: Using Model Disagreement on Unlabeled Data to Validate Classification Algorithms
Madani, Omid, Pennock, David M., Flake, Gary W.
In the context of binary classification, we define disagreement as a measure of how often two independently-trained models differ in their classification of unlabeled data. We explore the use of disagreement for error estimation and model selection. We call the procedure co-validation, since the two models effectively (in)validate one another by comparing results on unlabeled data, which we assume is relatively cheap and plentiful compared to labeled data. We show that per-instance disagreement is an unbiased estimate of the variance of error for that instance. We also show that disagreement provides a lower bound on the prediction (generalization) error, and a tight upper bound on the "variance of prediction error", or the variance of the average error across instances, where variance is measured across training sets.
Limits of Spectral Clustering
Luxburg, Ulrike V., Bousquet, Olivier, Belkin, Mikhail
An important aspect of clustering algorithms is whether the partitions constructed on finite samples converge to a useful clustering of the whole data space as the sample size increases. This paper investigates this question for normalized and unnormalized versions of the popular spectral clustering algorithm. Surprisingly, the convergence of unnormalized spectral clustering is more difficult to handle than the normalized case. Even though recently some first results on the convergence of normalized spectral clustering have been obtained, for the unnormalized case we have to develop a completely new approach combining tools from numerical integration, spectral and perturbation theory, and probability. It turns out that while in the normalized case, spectral clustering usually converges to a nice partition of the data space, in the unnormalized case the same only holds under strong additional assumptions which are not always satisfied. We conclude that our analysis gives strong evidence for the superiority of normalized spectral clustering. It also provides a basis for future exploration of other Laplacian-based methods.
Semi-supervised Learning with Penalized Probabilistic Clustering
While clustering is usually an unsupervised operation, there are circumstances in which we believe (with varying degrees of certainty) that items A and B should be assigned to the same cluster, while items A and C should not. We would like such pairwise relations to influence cluster assignments of out-of-sample data in a manner consistent with the prior knowledge expressed in the training set. Our starting point is probabilistic clustering based on Gaussian mixture models (GMM) of the data distribution. We express clustering preferences in the prior distribution over assignments of data points to clusters. This prior penalizes cluster assignments according to the degree with which they violate the preferences. We fit the model parameters with EM. Experiments on a variety of data sets show that PPC can consistently improve clustering results.
A Three Tiered Approach for Articulated Object Action Modeling and Recognition
Lu, Le, Hager, Gregory D., Younes, Laurent
Visual action recognition is an important problem in computer vision. In this paper, we propose a new method to probabilistically model and recognize actions of articulated objects, such as hand or body gestures, in image sequences. Our method consists of three levels of representation. At the low level, we first extract a feature vector invariant to scale and in-plane rotation by using the Fourier transform of a circular spatial histogram. Then, spectral partitioning [20] is utilized to obtain an initial clustering; this clustering is then refined using a temporal smoothness constraint. Gaussian mixture model (GMM) based clustering and density estimation in the subspace of linear discriminant analysis (LDA) are then applied to thousands of image feature vectors to obtain an intermediate level representation. Finally, at the high level we build a temporal multiresolution histogram model for each action by aggregating the clustering weights of sampled images belonging to that action. We discuss how this high level representation can be extended to achieve temporal scaling invariance and to include Bigram or Multi-gram transition information. Both image clustering and action recognition/segmentation results are given to show the validity of our three tiered representation.
Mistake Bounds for Maximum Entropy Discrimination
We establish a mistake bound for an ensemble method for classification based on maximizing the entropy of voting weights subject to margin constraints. The bound is the same as a general bound proved for the Weighted Majority Algorithm, and similar to bounds for other variants of Winnow. We prove a more refined bound that leads to a nearly optimal algorithm for learning disjunctions, again, based on the maximum entropy principle. We describe a simplification of the online maximum entropy method in which, after each iteration, the margin constraints are replaced with a single linear inequality. The simplified algorithm, which takes a similar form to Winnow, achieves the same mistake bounds.
An Investigation of Practical Approximate Nearest Neighbor Algorithms
Liu, Ting, Moore, Andrew W., Yang, Ke, Gray, Alexander G.
This paper concerns approximate nearest neighbor searching algorithms, which have become increasingly important, especially in high dimensional perception areas such as computer vision, with dozens of publications in recent years. Much of this enthusiasm is due to a successful new approximate nearest neighbor approach called Locality Sensitive Hashing (LSH). In this paper we ask the question: can earlier spatial data structure approaches to exact nearest neighbor, such as metric trees, be altered to provide approximate answers to proximity queries and if so, how? We introduce a new kind of metric tree that allows overlap: certain datapoints may appear in both the children of a parent. We also introduce new approximate k-NN search algorithms on this structure. We show why these structures should be able to exploit the same randomprojection-based approximations that LSH enjoys, but with a simpler algorithm and perhaps with greater efficiency. We then provide a detailed empirical evaluation on five large, high dimensional datasets which show up to 31-fold accelerations over LSH. This result holds true throughout the spectrum of approximation levels.
Multiple Alignment of Continuous Time Series
Listgarten, Jennifer, Neal, Radford M., Roweis, Sam T., Emili, Andrew
Multiple realizations of continuous-valued time series from a stochastic process often contain systematic variations in rate and amplitude. To leverage the information contained in such noisy replicate sets, we need to align them in an appropriate way (for example, to allow the data to be properly combined by adaptive averaging). We present the Continuous Profile Model (CPM), a generative model in which each observed time series is a non-uniformly subsampled version of a single latent trace, to which local rescaling and additive noise are applied. After unsupervised training, the learned trace represents a canonical, high resolution fusion of all the replicates. As well, an alignment in time and scale of each observation to this trace can be found by inference in the model. We apply CPM to successfully align speech signals from multiple speakers and sets of Liquid Chromatography-Mass Spectrometry proteomic data.