Uncertainty
The Population Posterior and Bayesian Modeling on Streams
Many modern data analysis problems involve inferences from streaming data. However, streaming data is not easily amenable to the standard probabilistic modeling approaches, which assume that we condition on finite data. We develop population variational Bayes, a new approach for using Bayesian modeling to analyze streams of data. It approximates a new type of distribution, the population posterior, which combines the notion of a population distribution of the data with Bayesian inference in a probabilistic model. We study our method with latent Dirichlet allocation and Dirichlet process mixtures on several large-scale data sets.
Efficient Bayesian Learning Curve Extrapolation using Prior-Data Fitted Networks
Learning curve extrapolation aims to predict model performance in later epochs of training, based on the performance in earlier epochs.In this work, we argue that, while the inherent uncertainty in the extrapolation of learning curves warrants a Bayesian approach, existing methods are (i) overly restrictive, and/or (ii) computationally expensive. We describe the first application of prior-data fitted neural networks (PFNs) in this context. A PFN is a transformer, pre-trained on data generated from a prior, to perform approximate Bayesian inference in a single forward pass. We propose LC-PFN, a PFN trained to extrapolate 10 million artificial right-censored learning curves generated from a parametric prior proposed in prior art using MCMC. We demonstrate that LC-PFN can approximate the posterior predictive distribution more accurately than MCMC, while being over 10 000 times faster.
ColdGANs: Taming Language GANs with Cautious Sampling Strategies
Training regimes based on Maximum Likelihood Estimation (MLE) suffer from known limitations, often leading to poorly generated text sequences that lack of coherence, factualness, and are prone to repetitions. At the root of these limitations is the mismatch between training and inference, i.e. the so-called exposure bias. Another problem lies in considering only the reference text as correct, while in practice several alternative formulations could be as good. Generative Adversarial Networks (GANs) could mitigate those limitations. Nonetheless, the discrete nature of text has hindered their application to language generation: the approaches proposed so far, based on Reinforcement Learning, have been shown to under-perform MLE.
Learning Generative Vision Transformer with Energy-Based Latent Space for Saliency Prediction
Vision transformer networks have shown superiority in many computer vision tasks. In this paper, we take a step further by proposing a novel generative vision transformer with latent variables following an informative energy-based prior for salient object detection. Both the vision transformer network and the energy-based prior model are jointly trained via Markov chain Monte Carlo-based maximum likelihood estimation, in which the sampling from the intractable posterior and prior distributions of the latent variables are performed by Langevin dynamics. Further, with the generative vision transformer, we can easily obtain a pixel-wise uncertainty map from an image, which indicates the model confidence in predicting saliency from the image. Different from the existing generative models which define the prior distribution of the latent variables as a simple isotropic Gaussian distribution, our model uses an energy-based informative prior which can be more expressive to capture the latent space of the data.
Can I Trust My Fairness Metric? Assessing Fairness with Unlabeled Data and Bayesian Inference
Group fairness is measured via parity of quantitative metrics across different protected demographic groups. In this paper, we investigate the problem of reliably assessing group fairness metrics when labeled examples are few but unlabeled examples are plentiful. We propose a general Bayesian framework that can augment labeled data with unlabeled data to produce more accurate and lower-variance estimates compared to methods based on labeled data alone. Our approach estimates calibrated scores (for unlabeled examples) of each group using a hierarchical latent variable model conditioned on labeled examples. This in turn allows for inference of posterior distributions for an array of group fairness metrics with a notion of uncertainty.
Automatic Variational Inference in Stan
Variational inference is a scalable technique for approximate Bayesian inference. Deriving variational inference algorithms requires tedious model-specific calculations; this makes it difficult for non-experts to use. We propose an automatic variational inference algorithm, automatic differentiation variational inference (ADVI); we implement it in Stan (code available), a probabilistic programming system. In ADVI the user provides a Bayesian model and a dataset, nothing else. We make no conjugacy assumptions and support a broad class of models.
Versatile Energy-Based Probabilistic Models for High Energy Physics
As a classical generative modeling approach, energy-based models have the natural advantage of flexibility in the form of the energy function. Recently, energy-based models have achieved great success in modeling high-dimensional data in computer vision and natural language processing. In line with these advancements, we build a multi-purpose energy-based probabilistic model for High Energy Physics events at the Large Hadron Collider. This framework builds on a powerful generative model and describes higher-order inter-particle interactions. It suits different encoding architectures and builds on implicit generation.
X-CAL: Explicit Calibration for Survival Analysis
When a model's predicted number of events within any time interval is similar to the observed number, it is called well-calibrated. A survival model's calibration can be measured using, for instance, distributional calibration (D-CALIBRATION) [Haider et al., 2020] which computes the squared difference between the observed and predicted number of events within different time intervals. Classically, calibration is addressed in post-training analysis. We develop explicit calibration (X-CAL), which turns D-CALIBRATION into a differentiable objective that can be used in survival modeling alongside maximum likelihood estimation and other objectives. X-CAL allows us to directly optimize calibration and strike a desired trade-off between predictive power and calibration.
Fast Bayesian Inference with Batch Bayesian Quadrature via Kernel Recombination
Calculation of Bayesian posteriors and model evidences typically requires numerical integration. Bayesian quadrature (BQ), a surrogate-model-based approach to numerical integration, is capable of superb sample efficiency, but its lack of parallelisation has hindered its practical applications. In this work, we propose a parallelised (batch) BQ method, employing techniques from kernel quadrature, that possesses an empirically exponential convergence rate.Additionally, just as with Nested Sampling, our method permits simultaneous inference of both posteriors and model evidence.Samples from our BQ surrogate model are re-selected to give a sparse set of samples, via a kernel recombination algorithm, requiring negligible additional time to increase the batch size.Empirically, we find that our approach significantly outperforms the sampling efficiency of both state-of-the-art BQ techniques and Nested Sampling in various real-world datasets, including lithium-ion battery analytics.
Interventional Sum-Product Networks: Causal Inference with Tractable Probabilistic Models
While probabilistic models are an important tool for studying causality, doing so suffers from the intractability of inference. As a step towards tractable causal models, we consider the problem of learning interventional distributions using sum-product networks (SPNs) that are over-parameterized by gate functions, e.g., neural networks. Providing an arbitrarily intervened causal graph as input, effectively subsuming Pearl's do-operator, the gate function predicts the parameters of the SPN. The resulting interventional SPNs are motivated and illustrated by a structural causal model themed around personal health. Our empirical evaluation against competing methods from both generative and causal modelling demonstrates that interventional SPNs indeed are both expressive and causally adequate.