Recent experiments have demonstrated that humans and animals typically reason probabilistically about their environment. This ability requires a neural code that represents probability distributions and neural circuits that are capable of implementing the operations of probabilistic inference. The proposed probabilistic population coding (PPC) framework provides a statistically efficient neural representation of probability distributions that is both broadly consistent with physiological measurements and capable of implementing some of the basic operations of probabilistic inference in a biologically plausible way. However, these experiments and the corresponding neural models have largely focused on simple (tractable) probabilistic computations such as cue combination, coordinate transformations, and decision making. As a result it remains unclear how to generalize this framework to more complex probabilistic computations. Here we address this short coming by showing that a very general approximate inference algorithm known as Variational Bayesian Expectation Maximization can be implemented within the linear PPC framework. We apply this approach to a generic problem faced by any given layer of cortex, namely the identification of latent causes of complex mixtures of spikes. We identify a formal equivalent between this spike pattern demixing problem and topic models used for document classification, in particular Latent Dirichlet Allocation (LDA). We then construct a neural network implementation of variational inference and learning for LDA that utilizes a linear PPC. This network relies critically on two non-linear operations: divisive normalization and super-linear facilitation, both of which are ubiquitously observed in neural circuits. We also demonstrate how online learning can be achieved using a variation of Hebb’s rule and describe an extesion of this work which allows us to deal with time varying and correlated latent causes.

A model connecting visual tracking and saliency has recently been proposed. This model is based on the saliency hypothesis for tracking which postulates that tracking is achieved by the top-down tuning, based on target features, of discriminant center-surround saliency mechanisms over time. In this work, we identify three main predictions that must hold if the hypothesis were true: 1) tracking reliability should be larger for salient than for non-salient targets, 2) tracking reliability should have a dependence on the defining variables of saliency, namely feature contrast and distractor heterogeneity, and must replicate the dependence of saliency on these variables, and 3) saliency and tracking can be implemented with common low level neural mechanisms. We confirm that the first two predictions hold by reporting results from a set of human behavior studies on the connection between saliency and tracking. We also show that the third prediction holds by constructing a common neurophysiologically plausible architecture that can computationally solve both saliency and tracking. This architecture is fully compliant with the standard physiological models of V1 and MT, and with what is known about attentional control in area LIP, while explaining the results of the human behavior experiments.

We consider the problem of estimating Shannon's entropy H in the under-sampled regime, where the number of possible symbols may be unknown or countably infinite. Pitman-Yor processes (a generalization of Dirichlet processes) provide tractable prior distributions over the space of countably infinite discrete distributions, and have found major applications in Bayesian non-parametric statistics and machine learning. Here we show that they also provide natural priors for Bayesian entropy estimation, due to the remarkable fact that the moments of the induced posterior distribution over H can be computed analytically. We derive formulas for the posterior mean (Bayes' least squares estimate) and variance under such priors. Moreover, we show that a fixed Dirichlet or Pitman-Yor process prior implies a narrow prior on H, meaning the prior strongly determines the entropy estimate in the under-sampled regime. We derive a family of continuous mixing measures such that the resulting mixture of Pitman-Yor processes produces an approximately flat (improper) prior over H. We explore the theoretical properties of the resulting estimator, and show that it performs well on data sampled from both exponential and power-law tailed distributions.

Bipartite matching problems characterize many situations, ranging from ranking in information retrieval to correspondence in vision. Exact inference in real-world applications of these problems is intractable, making efficient approximation methods essential for learning and inference. In this paper we propose a novel {\it sequential matching} sampler based on the generalization of the Plackett-Luce model, which can effectively make large moves in the space of matchings. This allows the sampler to match the difficult target distributions common in these problems: highly multimodal distributions with well separated modes. We present experimental results with bipartite matching problems - ranking and image correspondence - which show that the sequential matching sampler efficiently approximates the target distribution, significantly outperforming other sampling approaches.

Continuous relaxations play an important role in discrete optimization, but have not seen much use in approximate probabilistic inference. Here we show that a general form of the Gaussian Integral Trick makes it possible to transform a wide class of discrete variable undirected models into fully continuous systems. The continuous representation allows the use of gradient-based Hamiltonian Monte Carlo for inference, results in new ways of estimating normalization constants (partition functions), and in general opens up a number of new avenues for inference in difficult discrete systems. We demonstrate some of these continuous relaxation inference algorithms on a number of illustrative problems.

We present a multi-task learning approach to jointly estimate the means of multiple independent data sets. The proposed multi-task averaging (MTA) algorithm results in a convex combination of the single-task averages. We derive the optimal amount of regularization, and show that it can be effectively estimated. Simulations and real data experiments demonstrate that MTA both maximum likelihood and James-Stein estimators, and that our approach to estimating the amount of regularization rivals cross-validation in performance but is more computationally efficient.

Sum-product networks are a new deep architecture that can perform fast, exact inference onhigh-treewidth models. Only generative methods for training SPNs have been proposed to date. In this paper, we present the first discriminative training algorithms for SPNs, combining the high accuracy of the former with the representational power and tractability of the latter. We show that the class of tractable discriminative SPNs is broader than the class of tractable generative ones, and propose an efficient backpropagation-style algorithm for computing the gradient of the conditional log likelihood. Standard gradient descent suffers from the diffusion problem, but networks with many layers can be learned reliably using "hard"gradient descent, where marginal inference is replaced by MPE inference (i.e.,inferring the most probable state of the non-evidence variables). The resulting updates have a simple and intuitive form. We test discriminative SPNs on standard image classification tasks. We obtain the best results to date on the CIFAR-10 dataset, using fewer features than prior methods with an SPN architecture thatlearns local image structure discriminatively. We also report the highest published test accuracy on STL-10 even though we only use the labeled portion of the dataset.

In this paper, we consider the problem of clustering data points into lowdimensional subspacesin the presence of outliers. We pose the problem using a density estimation formulation with an associated generative model. Based on this probability model, we first develop an iterative expectation-maximization (EM) algorithm andthen derive its global solution. In addition, we develop two Bayesian methods based on variational Bayesian (VB) approximation, which are capable of automatic dimensionality selection. While the first method is based on an alternating optimizationscheme for all unknowns, the second method makes use of recent results in VB matrix factorization leading to fast and effective estimation. Both methods are extended to handle sparse outliers for robustness and can handle missingvalues. Experimental results suggest that proposed methods are very effective in subspace clustering and identifying outliers.

We present a Bayesian nonparametric model that discovers implicit social structure from interaction time-series data. Social groups are often formed implicitly, through actions among members of groups. Yet many models of social networks use explicitly declared relationships to infer social structure. We consider a particular class of Hawkes processes, a doubly stochastic point process, that is able to model reciprocity between groups of individuals. We then extend the Infinite Relational Model by using these reciprocating Hawkes processes to parameterise its edges, making events associated with edges co-dependent through time. Our model outperforms general, unstructured Hawkes processes as well as structured Poisson process-based models at predicting verbal and email turn-taking, and military conflicts among nations.

Clustering is a key component in data analysis toolbox. Despite its importance, scalable algorithms often eschew rich statistical models in favor of simpler descriptions such as $k$-means clustering. In this paper we present a sampler, capable of estimating mixtures of exponential families. At its heart lies a novel proposal distribution using random projections to achieve high throughput in generating proposals, which is crucial for clustering models with large numbers of clusters.