Variational methods provide a computationally scalable alternative to Monte Carlo methods for large-scale, Bayesian nonparametric learning. In practice, however, conventional batch and online variational methods quickly become trapped in local optima. In this paper, we consider a nonparametric topic model based on the hierarchical Dirichlet process (HDP), and develop a novel online variational inference algorithm based on split-merge topic updates. We derive a simpler and faster variational approximation of the HDP, and show that by intelligently splitting and merging components of the variational posterior, we can achieve substantially better predictions of test data than conventional online and batch variational algorithms. For streaming analysis of large datasets where batch analysis is infeasible, we show that our split-merge updates better capture the nonparametric properties of the underlying model, allowing continual learning of new topics.

Subspace learning seeks a low dimensional representation of data that enables accurate reconstruction. However, in many applications, data is obtained from multiple sources rather than a single source (e.g. an object might be viewed by cameras at different angles, or a document might consist of text and images). The conditional independence of separate sources imposes constraints on their shared latent representation, which, if respected, can improve the quality of the learned low dimensional representation. In this paper, we present a convex formulation of multi-view subspace learning that enforces conditional independence while reducing dimensionality. For this formulation, we develop an efficient algorithm that recovers an optimal data reconstruction by exploiting an implicit convex regularizer, then recovers the corresponding latent representation and reconstruction model, jointly and optimally. Experiments illustrate that the proposed method produces high quality results.

For modeling data matrices, this paper introduces Probabilistic Co-Subspace Addition (PCSA) model by simultaneously capturing the dependent structures among both rows and columns. Briefly, PCSA assumes that each entry of a matrix is generated by the additive combination of the linear mappings of two features, which distribute in the row-wise and column-wise latent subspaces. Consequently, it captures the dependencies among entries intricately, and is able to model the non-Gaussian and heteroscedastic density. Variational inference is proposed on PCSA for approximate Bayesian learning, where the updating for posteriors is formulated into the problem of solving Sylvester equations. Furthermore, PCSA is extended to tackling and filling missing values, to adapting its sparseness, and to modelling tensor data. In comparison with several state-of-art approaches, experiments demonstrate the effectiveness and efficiency of Bayesian (sparse) PCSA on modeling matrix (tensor) data and filling missing values.

We present a method for approximate inference for a broad class of non-conjugate probabilistic models. In particular, for the family of generalized linear model target densities we describe a rich class of variational approximating densities which can be best fit to the target by minimizing the Kullback-Leibler divergence. Our approach is based on using the Fourier representation which we show results in efficient and scalable inference.

Given a probabilistic graphical model, its density of states is a distribution that, for any likelihood value, gives the number of configurations with that probability. Weintroduce a novel message-passing algorithm called Density Propagation (DP) for estimating this distribution. We show that DP is exact for tree-structured graphical models and is, in general, a strict generalization of both sum-product and max-product algorithms. Further, we use density of states and tree decomposition to introduce a new family of upper and lower bounds on the partition function. For any tree decomposition, the new upper bound based on finer-grained density of state information is provably at least as tight as previously known bounds based on convexity of the log-partition function, and strictly stronger if a general condition holds.We conclude with empirical evidence of improvement over convex relaxations and mean-field based bounds.

A challenging problem in hierarchical classification is to leverage the hierarchical relations among classes for improving classification performance. An even greater challenge is to do so in a manner that is computationally feasible for the large scale problems usually encountered in practice. This paper proposes a set of Bayesian methods to model hierarchical dependencies among class labels using multivari- ate logistic regression. Specifically, the parent-child relationships are modeled by placing a hierarchical prior over the children nodes centered around the parame- ters of their parents; thereby encouraging classes nearby in the hierarchy to share similar model parameters. We present new, efficient variational algorithms for tractable posterior inference in these models, and provide a parallel implementa- tion that can comfortably handle large-scale problems with hundreds of thousands of dimensions and tens of thousands of classes. We run a comparative evaluation on multiple large-scale benchmark datasets that highlights the scalability of our approach, and shows a significant performance advantage over the other state-of- the-art hierarchical methods.

Accurate and detailed models of the progression of neurodegenerative diseases such as Alzheimer's (AD) are crucially important for reliable early diagnosis and the determination and deployment of effective treatments. In this paper, we introduce the ALPACA (Alzheimer's disease Probabilistic Cascades) model, a generative model linking latent Alzheimer's progression dynamics to observable biomarker data. In contrast with previous works which model disease progression as a fixed ordering of events, we explicitly model the variability over such orderings among patients which is more realistic, particularly for highly detailed disease progression models. We describe efficient learning algorithms for ALPACA and discuss promising experimental results on a real cohort of Alzheimer's patients from the Alzheimer's Disease Neuroimaging Initiative.

The question of aggregating pairwise comparisons to obtain a global ranking over a collection of objects has been of interest for a very long time: be it ranking of online gamers (e.g. MSR’s TrueSkill system) and chess players, aggregating social opinions, or deciding which product to sell based on transactions. In most settings, in addition to obtaining ranking, finding ‘scores’ for each object (e.g. player’s rating) is of interest to understanding the intensity of the preferences. In this paper, we propose a novel iterative rank aggregation algorithm for discovering scores for objects from pairwise comparisons. The algorithm has a natural random walk interpretation over the graph of objects with edges present between two objects if they are compared; the scores turn out to be the stationary probability of this random walk. The algorithm is model independent. To establish the efficacy of our method, however, we consider the popular Bradley-Terry-Luce (BTL) model in which each object has an associated score which determines the probabilistic outcomes of pairwise comparisons between objects. We bound the finite sample error rates between the scores assumed by the BTL model and those estimated by our algorithm. This, in essence, leads to order-optimal dependence on the number of samples required to learn the scores well by our algorithm. Indeed, the experimental evaluation shows that our (model independent) algorithm performs as well as the Maximum Likelihood Estimator of the BTL model and outperforms a recently proposed algorithm by Ammar and Shah [1].

How does the brain combine prior knowledge with sensory evidence when making decisions under uncertainty? Two competing descriptive models have been proposed based on experimental data. The first posits an additive offset to a decision variable, implying a static effect of the prior. However, this model is inconsistent with recent data from a motion discrimination task involving temporal integration of uncertain sensory evidence. To explain this data, a second model has been proposed which assumes a time-varying influence of the prior. Here we present a normative model of decision making that incorporates prior knowledge in a principled way. We show that the additive offset model and the time-varying prior model emerge naturally when decision making is viewed within the framework of partially observable Markov decision processes (POMDPs). Decision making in the model reduces to (1) computing beliefs given observations and prior information in a Bayesian manner, and (2) selecting actions based on these beliefs to maximize the expected sum of future rewards. We show that the model can explain both data previously explained using the additive offset model as well as more recent data on the time-varying influence of prior knowledge on decision making.

We consider the estimation of an i.i.d.\ vector $\xbf \in \R^n$ from measurements $\ybf \in \R^m$ obtained by a general cascade model consisting of a known linear transform followed by a probabilistic componentwise (possibly nonlinear) measurement channel. We present a method, called adaptive generalized approximate message passing (Adaptive GAMP), that enables joint learning of the statistics of the prior and measurement channel along with estimation of the unknown vector $\xbf$. The proposed algorithm is a generalization of a recently-developed method by Vila and Schniter that uses expectation-maximization (EM) iterations where the posteriors in the E-steps are computed via approximate message passing. The techniques can be applied to a large class of learning problems including the learning of sparse priors in compressed sensing or identification of linear-nonlinear cascade models in dynamical systems and neural spiking processes. We prove that for large i.i.d.\ Gaussian transform matrices the asymptotic componentwise behavior of the adaptive GAMP algorithm is predicted by a simple set of scalar state evolution equations. This analysis shows that the adaptive GAMP method can yield asymptotically consistent parameter estimates, which implies that the algorithm achieves a reconstruction quality equivalent to the oracle algorithm that knows the correct parameter values. The adaptive GAMP methodology thus provides a systematic, general and computationally efficient method applicable to a large range of complex linear-nonlinear models with provable guarantees.