Learning of low dimensional structure in multidimensional data is a canonical problem in machine learning. One common approach is to suppose that the observed data are close to a lower-dimensional smooth manifold. There are a rich variety of manifold learning methods available, which allow mapping of data points to the manifold. However, there is a clear lack of probabilistic methods that allow learning of the manifold along with the generative distribution of the observed data. The best attempt is the Gaussian process latent variable model (GP-LVM), but identifiability issues lead to poor performance. We solve these issues by proposing a novel Coulomb repulsive process (Corp) for locations of points on the manifold, inspired by physical models of electrostatic interactions among particles. Combining this process with a GP prior for the mapping function yields a novel electrostatic GP (electroGP) process. Focusing on the simple case of a one-dimensional manifold, we develop efficient inference algorithms, and illustrate substantially improved performance in a variety of experiments including filling in missing frames in video.

Variational inference is a scalable technique for approximate Bayesian inference. Deriving variational inference algorithms requires tedious model-specific calculations; this makes it difficult for non-experts to use. We propose an automatic variational inference algorithm, automatic differentiation variational inference (ADVI); we implement it in Stan (code available), a probabilistic programming system. In ADVI the user provides a Bayesian model and a dataset, nothing else. We make no conjugacy assumptions and support a broad class of models. The algorithm automatically determines an appropriate variational family and optimizes the variational objective. We compare ADVI to MCMC sampling across hierarchical generalized linear models, nonconjugate matrix factorization, and a mixture model. We train the mixture model on a quarter million images. With ADVI we can use variational inference on any model we write in Stan.

Lifted inference rules exploit symmetries for fast reasoning in statistical relational models.Computational complexity of these rules is highly dependent on the choice of the constraint language they operate on and therefore coming up with the right kind of representation is critical to the success of lifted inference. In this paper, we propose a new constraint language, called setineq, which allows subset, equality and inequality constraints, to represent substitutions over the variables inthe theory. Our constraint formulation is strictly more expressive than existing representations, yet easy to operate on. We reformulate the three main lifting rules: decomposer, generalized binomial and the recently proposed single occurrence for MAP inference, to work with our constraint representation. Experiments onbenchmark MLNs for exact and sampling based inference demonstrate the effectiveness of our approach over several other existing techniques.

We show that the maximum-likelihood (ML) estimate of models derived from Luce's choice axiom (e.g., the Plackett-Luce model) can be expressed as the stationary distribution of a Markov chain. This conveys insight into several recently proposed spectral inference algorithms. We take advantage of this perspective and formulate a new spectral algorithm that is significantly more accurate than previous ones for the Plackett--Luce model. With a simple adaptation, this algorithm can be used iteratively, producing a sequence of estimates that converges to the ML estimate. The ML version runs faster than competing approaches on a benchmark of five datasets. Our algorithms are easy to implement, making them relevant for practitioners at large.

We provide a theoretical framework for analyzing basis function construction for linear value function approximation in Markov Decision Processes (MDPs). We show that important existing methods, such as Krylov bases and Bellman-error-based methods are a special case of the general framework we develop. We provide a general algorithmic framework for computing basis function refinements which “respect” the dynamics of the environment, and we derive approximation error bounds that apply for any algorithm respecting this general framework. We also show how, using ideas related to bisimulation metrics, one can translate basis refinement into a process of finding “prototypes” that are diverse enough to represent the given MDP.

A key bottleneck in structured output prediction is the need for inference during training and testing, usually requiring some form of dynamic programming. Rather than using approximate inference or tailoring a specialized inference method for a particular structure---standard responses to the scaling challenge---we propose to embed prediction constraints directly into the learned representation. By eliminating the need for explicit inference a more scalable approach to structured output prediction can be achieved, particularly at test time. We demonstrate the idea for multi-label prediction under subsumption and mutual exclusion constraints, where a relationship to maximum margin structured output prediction can be established. Experiments demonstrate that the benefits of structured output training can still be realized even after inference has been eliminated.

We consider the problem of Bayesian parameter estimation for deep neural networks, which is important in problem settings where we may have little data, and/ or where we need accurate posterior predictive densities p(y|x, D), e.g., for applications involving bandits or active learning. One simple approach to this is to use online Monte Carlo methods, such as SGLD (stochastic gradient Langevin dynamics). Unfortunately, such a method needs to store many copies of the parameters (which wastes memory), and needs to make predictions using many versions of the model (which wastes time).We describe a method for “distilling” a Monte Carlo approximation to the posterior predictive density into a more compact form, namely a single deep neural network. We compare to two very recent approaches to Bayesian neural networks, namely an approach based on expectation propagation [HLA15] and an approach based on variational Bayes [BCKW15]. Our method performs better than both of these, is much simpler to implement, and uses less computation at test time.

Computing the MAP assignment in graphical models is generally intractable. As a result, for discrete graphical models, the MAP problem is often approximated using linear programming relaxations. Much research has focused on characterizing when these LP relaxations are tight, and while they are relatively well-understood in the discrete case, only a few results are known for their continuous analog. In this work, we use graph covers to provide necessary and sufficient conditions for continuous MAP relaxations to be tight. We use this characterization to give simple proofs that the relaxation is tight for log-concave decomposable and log-supermodular decomposable models. We conclude by exploring the relationship between these two seemingly distinct classes of functions and providing specific conditions under which the MAP relaxation can and cannot be tight.

Tractable learning aims to learn probabilistic models where inference is guaranteed to be efficient. However, the particular class of queries that is tractable depends on the model and underlying representation. Usually this class is MPE or conditional probabilities $\Pr(\xs|\ys)$ for joint assignments~$\xs,\ys$. We propose a tractable learner that guarantees efficient inference for a broader class of queries. It simultaneously learns a Markov network and its tractable circuit representation, in order to guarantee and measure tractability. Our approach differs from earlier work by using Sentential Decision Diagrams (SDD) as the tractable language instead of Arithmetic Circuits (AC). SDDs have desirable properties, which more general representations such as ACs lack, that enable basic primitives for Boolean circuit compilation. This allows us to support a broader class of complex probability queries, including counting, threshold, and parity, in polytime.

There is renewed interest in formulating integration as an inference problem, motivated by obtaining a full distribution over numerical error that can be propagated through subsequent computation. Current methods, such as Bayesian Quadrature, demonstrate impressive empirical performance but lack theoretical analysis. An important challenge is to reconcile these probabilistic integrators with rigorous convergence guarantees. In this paper, we present the first probabilistic integrator that admits such theoretical treatment, called Frank-Wolfe Bayesian Quadrature (FWBQ). Under FWBQ, convergence to the true value of the integral is shown to be exponential and posterior contraction rates are proven to be superexponential. In simulations, FWBQ is competitive with state-of-the-art methods and out-performs alternatives based on Frank-Wolfe optimisation. Our approach is applied to successfully quantify numerical error in the solution to a challenging model choice problem in cellular biology.