Uncertainty
Semantic Scan: Detecting Subtle, Spatially Localized Events in Text Streams
Maurya, Abhinav, Murray, Kenton, Liu, Yandong, Dyer, Chris, Cohen, William W., Neill, Daniel B.
Early detection and precise characterization of emerging topics in text streams can be highly useful in applications such as timely and targeted public health interventions and discovering evolving regional business trends. Many methods have been proposed for detecting emerging events in text streams using topic modeling. However, these methods have numerous shortcomings that make them unsuitable for rapid detection of locally emerging events on massive text streams. In this paper, we describe Semantic Scan (SS) that has been developed specifically to overcome these shortcomings in detecting new spatially compact events in text streams. Semantic Scan integrates novel contrastive topic modeling with online document assignment and principled likelihood ratio-based spatial scanning to identify emerging events with unexpected patterns of keywords hidden in text streams. This enables more timely and accurate detection and characterization of anomalous, spatially localized emerging events. Semantic Scan does not require manual intervention or labeled training data, and is robust to noise in real-world text data since it identifies anomalous text patterns that occur in a cluster of new documents rather than an anomaly in a single new document. We compare Semantic Scan to alternative state-of-the-art methods such as Topics over Time, Online LDA, and Labeled LDA on two real-world tasks: (i) a disease surveillance task monitoring free-text Emergency Department chief complaints in Allegheny County, and (ii) an emerging business trend detection task based on Yelp reviews. On both tasks, we find that Semantic Scan provides significantly better event detection and characterization accuracy than competing approaches, while providing up to an order of magnitude speedup.
Deep Gaussian Processes for Regression using Approximate Expectation Propagation
Bui, Thang D., Hernรกndez-Lobato, Daniel, Li, Yingzhen, Hernรกndez-Lobato, Josรฉ Miguel, Turner, Richard E.
Deep Gaussian processes (DGPs) are multi-layer hierarchical generalisations of Gaussian processes (GPs) and are formally equivalent to neural networks with multiple, infinitely wide hidden layers. DGPs are nonparametric probabilistic models and as such are arguably more flexible, have a greater capacity to generalise, and provide better calibrated uncertainty estimates than alternative deep models. This paper develops a new approximate Bayesian learning scheme that enables DGPs to be applied to a range of medium to large scale regression problems for the first time. The new method uses an approximate Expectation Propagation procedure and a novel and efficient extension of the probabilistic backpropagation algorithm for learning. We evaluate the new method for non-linear regression on eleven real-world datasets, showing that it always outperforms GP regression and is almost always better than state-of-the-art deterministic and sampling-based approximate inference methods for Bayesian neural networks. As a by-product, this work provides a comprehensive analysis of six approximate Bayesian methods for training neural networks.
Online Low-Rank Subspace Learning from Incomplete Data: A Bayesian View
Giampouras, Paris V., Rontogiannis, Athanasios A., Themelis, Konstantinos E., Koutroumbas, Konstantinos D.
Extracting the underlying low-dimensional space where high-dimensional signals often reside has long been at the center of numerous algorithms in the signal processing and machine learning literature during the past few decades. At the same time, working with incomplete (partly observed) large scale datasets has recently been commonplace for diverse reasons. This so called {\it big data era} we are currently living calls for devising online subspace learning algorithms that can suitably handle incomplete data. Their envisaged objective is to {\it recursively} estimate the unknown subspace by processing streaming data sequentially, thus reducing computational complexity, while obviating the need for storing the whole dataset in memory. In this paper, an online variational Bayes subspace learning algorithm from partial observations is presented. To account for the unawareness of the true rank of the subspace, commonly met in practice, low-rankness is explicitly imposed on the sought subspace data matrix by exploiting sparse Bayesian learning principles. Moreover, sparsity, {\it simultaneously} to low-rankness, is favored on the subspace matrix by the sophisticated hierarchical Bayesian scheme that is adopted. In doing so, the proposed algorithm becomes adept in dealing with applications whereby the underlying subspace may be also sparse, as, e.g., in sparse dictionary learning problems. As shown, the new subspace tracking scheme outperforms its state-of-the-art counterparts in terms of estimation accuracy, in a variety of experiments conducted on simulated and real data.
The Automatic Statistician: A Relational Perspective
Hwang, Yunseong, Tong, Anh, Choi, Jaesik
Gaussian Processes (GPs) provide a general and analytically tractable way of modeling complex time-varying, nonparametric functions. The Automatic Bayesian Covariance Discovery (ABCD) system constructs natural-language description of time-series data by treating unknown time-series data nonparametrically using GP with a composite covariance kernel function. Unfortunately, learning a composite covariance kernel with a single time-series data set often results in less informative kernel that may not give qualitative, distinctive descriptions of data. We address this challenge by proposing two relational kernel learning methods which can model multiple time-series data sets by finding common, shared causes of changes. We show that the relational kernel learning methods find more accurate models for regression problems on several real-world data sets; US stock data, US house price index data and currency exchange rate data.
Approximate Probabilistic Inference via Word-Level Counting
Chakraborty, Supratik, Meel, Kuldeep S., Mistry, Rakesh, Vardi, Moshe Y.
Hashing-based model counting has emerged as a promising approach for large-scale probabilistic inference on graphical models. A key component of these techniques is the use of xor-based 2-universal hash functions that operate over Boolean domains. Many counting problems arising in probabilistic inference are, however, naturally encoded over finite discrete domains. Techniques based on bit-level (or Boolean) hash functions require these problems to be propositionalized, making it impossible to leverage the remarkable progress made in SMT (Satisfiability Modulo Theory) solvers that can reason directly over words (or bit-vectors). In this work, we present the first approximate model counter that uses word-level hashing functions, and can directly leverage the power of sophisticated SMT solvers. Empirical evaluation over an extensive suite of benchmarks demonstrates the promise of the approach.
Bayesian nonparametric image segmentation using a generalized Swendsen-Wang algorithm
Da Xu, Richard Yi, Caron, Francois, Doucet, Arnaud
Unsupervised image segmentation aims at clustering the set of pixels of an image into spatially homogeneous regions. We introduce here a class of Bayesian nonparametric models to address this problem. These models are based on a combination of a Potts-like spatial smoothness component and a prior on partitions which is used to control both the number and size of clusters. This class of models is flexible enough to include the standard Potts model and the more recent Potts-Dirichlet Process model \cite{Orbanz2008}. More importantly, any prior on partitions can be introduced to control the global clustering structure so that it is possible to penalize small or large clusters if necessary. Bayesian computation is carried out using an original generalized Swendsen-Wang algorithm. Experiments demonstrate that our method is competitive in terms of RAND\ index compared to popular image segmentation methods, such as mean-shift, and recent alternative Bayesian nonparametric models.
Empirical Bayes Estimation for the Stochastic Blockmodel
Suwan, Shakira, Lee, Dominic S., Tang, Runze, Sussman, Daniel L., Tang, Minh, Priebe, Carey E.
The stochastic blockmodel (SBM) is a generative model for network data introduced in Holland et al. (1983). The SBM is a member of the general class of latent position random graph models introduced in Hoff et al. (2002). These models have been used in various application domains as diverse as social networks (vertices may represent people with edges indicating social interaction), citation networks (who cites whom), connectomics (brain connectivity networks; vertices may represent neurons with edges indicating axon-synapse-dendrite connections, or vertices may represent brain regions with edges indicating connectivity between regions), and many others. For comprehensive reviews of statistical models and applications, see Fienberg (2010), Goldenberg et al. (2010), Fienberg (2012). In general, statistical inference on graphs is becoming essential in many areas of science, engineering, and business. The SBM supposes that each of n vertices is assigned to one of K blocks. The probability of an 1 edge between two vertices depends only on their respective block memberships, and the presence of edges are conditionally independent given block memberships.
Machine Learning Model of the Swift/BAT Trigger Algorithm for Long GRB Population Studies
Graff, Philip B, Lien, Amy Y, Baker, John G, Sakamoto, Takanori
To draw inferences about gamma-ray burst (GRB) source populations based on Swift observations, it is essential to understand the detection efficiency of the Swift burst alert telescope (BAT). This study considers the problem of modeling the Swift/BAT triggering algorithm for long GRBs, a computationally expensive procedure, and models it using machine learning algorithms. A large sample of simulated GRBs from Lien 2014 is used to train various models: random forests, boosted decision trees (with AdaBoost), support vector machines, and artificial neural networks. The best models have accuracies of $\gtrsim97\%$ ($\lesssim 3\%$ error), which is a significant improvement on a cut in GRB flux which has an accuracy of $89.6\%$ ($10.4\%$ error). These models are then used to measure the detection efficiency of Swift as a function of redshift $z$, which is used to perform Bayesian parameter estimation on the GRB rate distribution. We find a local GRB rate density of $n_0 \sim 0.48^{+0.41}_{-0.23} \ {\rm Gpc}^{-3} {\rm yr}^{-1}$ with power-law indices of $n_1 \sim 1.7^{+0.6}_{-0.5}$ and $n_2 \sim -5.9^{+5.7}_{-0.1}$ for GRBs above and below a break point of $z_1 \sim 6.8^{+2.8}_{-3.2}$. This methodology is able to improve upon earlier studies by more accurately modeling Swift detection and using this for fully Bayesian model fitting. The code used in this is analysis is publicly available online (https://github.com/PBGraff/SwiftGRB_PEanalysis).
Toward Optimal Feature Selection in Naive Bayes for Text Categorization
Tang, Bo, Kay, Steven, He, Haibo
Automated feature selection is important for text categorization to reduce the feature size and to speed up the learning process of classifiers. In this paper, we present a novel and efficient feature selection framework based on the Information Theory, which aims to rank the features with their discriminative capacity for classification. We first revisit two information measures: Kullback-Leibler divergence and Jeffreys divergence for binary hypothesis testing, and analyze their asymptotic properties relating to type I and type II errors of a Bayesian classifier. We then introduce a new divergence measure, called Jeffreys-Multi-Hypothesis (JMH) divergence, to measure multi-distribution divergence for multi-class classification. Based on the JMH-divergence, we develop two efficient feature selection methods, termed maximum discrimination ($MD$) and $MD-\chi^2$ methods, for text categorization. The promising results of extensive experiments demonstrate the effectiveness of the proposed approaches.
A Variational Analysis of Stochastic Gradient Algorithms
Mandt, Stephan, Hoffman, Matthew D., Blei, David M.
Stochastic Gradient Descent (SGD) is an important algorithm in machine learning. With constant learning rates, it is a stochastic process that, after an initial phase of convergence, generates samples from a stationary distribution. We show that SGD with constant rates can be effectively used as an approximate posterior inference algorithm for probabilistic modeling. Specifically, we show how to adjust the tuning parameters of SGD such as to match the resulting stationary distribution to the posterior. This analysis rests on interpreting SGD as a continuous-time stochastic process and then minimizing the Kullback-Leibler divergence between its stationary distribution and the target posterior. (This is in the spirit of variational inference.) In more detail, we model SGD as a multivariate Ornstein-Uhlenbeck process and then use properties of this process to derive the optimal parameters. This theoretical framework also connects SGD to modern scalable inference algorithms; we analyze the recently proposed stochastic gradient Fisher scoring under this perspective. We demonstrate that SGD with properly chosen constant rates gives a new way to optimize hyperparameters in probabilistic models.