In this study, we present a multi-class graphical Bayesian predictive classifier that incorporates the uncertainty in the model selection into the standard Bayesian formalism. For each class, the dependence structure underlying the observed features is represented by a set of decomposable Gaussian graphical models. Emphasis is then placed on the Bayesian model averaging which takes full account of the class-specific model uncertainty by averaging over the posterior graph model probabilities. Even though the decomposability assumption severely reduces the model space, the size of the class of decomposable models is still immense, rendering the explicit Bayesian averaging over all the models infeasible. To address this issue, we consider the particle Gibbs strategy of Olsson et al. (2016) for posterior sampling from decomposable graphical models which utilizes the Christmas tree algorithm of Rios et al. (2016) as proposal kernel. We also derive the a strong hyper Markov law which we call the hyper normal Wishart law that allow to perform the resultant Bayesian calculations locally. The proposed predictive graphical classifier reveals superior performance compared to the ordinary Bayesian predictive rule that does not account for the model uncertainty, as well as to a number of out-of-the-box classifiers.

We propose kernel sequential Monte Carlo (KSMC), a framework for sampling from static target densities. KSMC is a family of sequential Monte Carlo algorithms that are based on building emulator models of the current particle system in a reproducing kernel Hilbert space. We here focus on modelling nonlinear covariance structure and gradients of the target. The emulator's geometry is adaptively updated and subsequently used to inform local proposals. Unlike in adaptive Markov chain Monte Carlo, continuous adaptation does not compromise convergence of the sampler. KSMC combines the strengths of sequental Monte Carlo and kernel methods: superior performance for multimodal targets and the ability to estimate model evidence as compared to Markov chain Monte Carlo, and the emulator's ability to represent targets that exhibit high degrees of nonlinearity. As KSMC does not require access to target gradients, it is particularly applicable on targets whose gradients are unknown or prohibitively expensive. We describe necessary tuning details and demonstrate the benefits of the the proposed methodology on a series of challenging synthetic and real-world examples.

Approximate Bayesian Computation (ABC) is a method to obtain a posterior distribution without a likelihood function, using simulations and a set of distance metrics. For that reason, it has recently been gaining popularity as an analysis tool in cosmology and astrophysics. Its drawback, however, is a slow convergence rate. We propose a novel method, which we call qABC, to accelerate ABC with Quantile Regression. In this method, we create a model of quantiles of distance measure as a function of input parameters. This model is trained on a small number of simulations and estimates which regions of the prior space are likely to be accepted into the posterior. Other regions are then immediately rejected. This procedure is then repeated as more simulations are available. We apply it to the practical problem of estimation of redshift distribution of cosmological samples, using forward modelling developed in previous work. The qABC method converges to nearly same posterior as the basic ABC. It uses, however, only 20\% of the number of simulations compared to basic ABC, achieving a fivefold gain in execution time for our problem. For other problems the acceleration rate may vary; it depends on how close the prior is to the final posterior. We discuss possible improvements and extensions to this method.

Relational probabilistic models have the challenge of aggregation, where one variable depends on a population of other variables. Consider the problem of predicting gender from movie ratings; this is challenging because the number of movies per user and users per movie can vary greatly. Surprisingly, aggregation is not well understood. In this paper, we show that existing relational models (implicitly or explicitly) either use simple numerical aggregators that lose great amounts of information, or correspond to naive Bayes, logistic regression, or noisy-OR that suffer from overconfidence. We propose new simple aggregators and simple modifications of existing models that empirically outperform the existing ones. The intuition we provide on different (existing or new) models and their shortcomings plus our empirical findings promise to form the foundation for future representations.

Supervisory signals have the potential to make low-dimensional data representations, like those learned by mixture and topic models, more interpretable and useful. We propose a framework for training latent variable models that explicitly balances two goals: recovery of faithful generative explanations of high-dimensional data, and accurate prediction of associated semantic labels. Existing approaches fail to achieve these goals due to an incomplete treatment of a fundamental asymmetry: the intended application is always predicting labels from data, not data from labels. Our prediction-constrained objective for training generative models coherently integrates loss-based supervisory signals while enabling effective semi-supervised learning from partially labeled data. We derive learning algorithms for semi-supervised mixture and topic models using stochastic gradient descent with automatic differentiation. We demonstrate improved prediction quality compared to several previous supervised topic models, achieving predictions competitive with high-dimensional logistic regression on text sentiment analysis and electronic health records tasks while simultaneously learning interpretable topics.

The AMIDST Toolbox allows you to model your problem using a flexible probabilistic language based on graphical models. Then you fit your model with data using a Bayesian approach to handle modeling uncertainty. AMIDST provides tailored parallel (powered by Java 8 Streams) and distributed (powered by Flink or Spark) implementations of Bayesian parameter learning for batch and streaming data. This processing is based on flexible and scalable message passing algorithms. Data Streams: Update your models when new data is available.

Neyman-Scott is a classic example of an estimation problem with a partially-consistent posterior, for which standard estimation methods tend to produce inconsistent results. Past attempts to create consistent estimators for Neyman-Scott have led to ad-hoc solutions, to estimators that do not satisfy representation invariance, to restrictions over the choice of prior and more. We present a simple construction for a general-purpose Bayes estimator, invariant to representation, which satisfies consistency on Neyman-Scott over any nondegenerate prior. We argue that the good attributes of the estimator are due to its intrinsic properties, and generalise beyond Neyman-Scott as well. Keywords: Neyman-Scott, consistent estimation, minEKL, Kullback-Leibler, Bayes estimation, invariance 1. Introduction In [24], Neyman and Scott introduced a problem in consistent estimation that has since been studied extensively in many fields (see [18] for a review).

For decomposable score-based structure learning of Bayesian networks, existing approaches first compute a collection of candidate parent sets for each variable and then optimize over this collection by choosing one parent set for each variable without creating directed cycles while maximizing the total score. We target the task of constructing the collection of candidate parent sets when the score of choice is the Bayesian Information Criterion (BIC). We provide new non-trivial results that can be used to prune the search space of candidate parent sets of each node. We analyze how these new results relate to previous ideas in the literature both theoretically and empirically. We show in experiments with UCI data sets that gains can be significant. Since the new pruning rules are easy to implement and have low computational costs, they can be promptly integrated into all state-of-the-art methods for structure learning of Bayesian networks.

Strict Minimum Message Length (SMML) is a statistical inference method widely cited (but only with informal arguments) as providing estimations that are consistent for general estimation problems. It is, however, almost invariably intractable to compute, for which reason only approximations of it (known as MML algorithms) are ever used in practice. We investigate the Neyman-Scott estimation problem, an oft-cited showcase for the consistency of MML, and show that even with a natural choice of prior, neither SMML nor its popular approximations are consistent for it, thereby providing a counterexample to the general claim. This is the first known explicit construction of an SMML solution for a natural, high-dimensional problem. We use the same novel construction methods to refute other claims regarding MML also appearing in the literature.

We propose a simple method that combines neural networks and Gaussian processes. The proposed method can estimate the uncertainty of outputs and flexibly adjust target functions where training data exist, which are advantages of Gaussian processes. The proposed method can also achieve high generalization performance for unseen input configurations, which is an advantage of neural networks. With the proposed method, neural networks are used for the mean functions of Gaussian processes. We present a scalable stochastic inference procedure, where sparse Gaussian processes are inferred by stochastic variational inference, and the parameters of neural networks and kernels are estimated by stochastic gradient descent methods, simultaneously. We use two real-world spatio-temporal data sets to demonstrate experimentally that the proposed method achieves better uncertainty estimation and generalization performance than neural networks and Gaussian processes.