One of the critical issues when adopting Bayesian networks (BNs) to model dependencies among random variables is to "learn" their structure. This is a well-known NP-hard problem in its most general and classical formulation, which is furthermore complicated by known pitfalls such as the issue of I-equivalence among different structures. In this work we restrict the investigation to a specific class of networks, i.e., those representing the dynamics of phenomena characterized by the monotonic accumulation of events. Such phenomena allow to set specific structural constraints based on Suppes' theory of probabilistic causation and, accordingly, to define constrained BNs, named Suppes-Bayes Causal Networks (SBCNs). Within this framework, we study the structure learning of SBCNs via extensive simulations with various state-of-the-art search strategies, such as canonical local search techniques and Genetic Algorithms. This investigation is intended to be an extension and an in-depth clarification of our previous works on SBCN structure learning. Among the main results, we show that Suppes' constraints do simplify the learning task, by reducing the solution search space and providing a temporal ordering on the variables, which simplifies the complications derived by I-equivalent structures. Finally, we report on tradeoffs among different optimization techniques that can be used to learn SBCNs.

This article describes an implementation of a nonparametric Bayesian approach to solving binary classification problems on graphs. We consider a hierarchical Bayesian approach with a prior that is constructed by truncating a series expansion of the soft label function using the graph Laplacian eigenfunctions as basis functions. We compare our truncated prior to the untruncated Laplacian based prior in simulated and real data examples to illustrate the improved scalability in terms of size of the underlying graph.

Finite mixture models have become a popular tool for clustering. Amongst other uses, they have been applied for clustering longitudinal data and clustering high-dimensional data. In the latter case, a latent Gaussian mixture model is sometimes used. Although there has been much work on clustering using latent variables and on clustering longitudinal data, respectively, there has been a paucity of work that combines these features. An approach is developed for clustering longitudinal data with many time points based on an extension of the mixture of common factor analyzers model. A variation of the expectation-maximization algorithm is used for parameter estimation and the Bayesian information criterion is used for model selection. The approach is illustrated using real and simulated data.

Local network community detection aims to find a single community in a large network, while inspecting only a small part of that network around a given seed node. This is much cheaper than finding all communities in a network. Most methods for local community detection are formulated as ad-hoc optimization problems. In this work, we instead start from a generative model for networks with community structure. By assuming that the network is uniform, we can approximate the structure of unobserved parts of the network to obtain a method for local community detection. We apply this local approximation technique to two variants of the stochastic block model. To our knowledge, this results in the first local community detection methods based on probabilistic models. Interestingly, in the limit, one of the proposed approximations corresponds to conductance, a popular metric in this field. Experiments on real and synthetic datasets show comparable or improved results compared to state-of-the-art local community detection algorithms.

Discovering the causal structure among a set of variables is a fundamental problem in many areas of science. In this paper, we propose Kernel Conditional Deviance for Causal Inference (KCDC) a fully nonparametric causal discovery method based on purely observational data. From a novel interpretation of the notion of asymmetry between cause and effect, we derive a corresponding asymmetry measure using the framework of reproducing kernel Hilbert spaces. Based on this, we propose three decision rules for causal discovery. We demonstrate the wide applicability of our method across a range of diverse synthetic datasets. Furthermore, we test our method on real-world time series data and the real-world benchmark dataset Tubingen Cause-Effect Pairs where we outperform existing state-of-the-art methods.

We propose scalable methods to execute counting queries in machine learning applications. To achieve memory and computational efficiency, we abstract counting queries and their context such that the counts can be aggregated as a stream. We demonstrate performance and scalability of the resulting approach on random queries, and through extensive experimentation using Bayesian networks learning and association rule mining. Our methods significantly outperform commonly used ADtrees and hash tables, and are practical alternatives for processing large-scale data.

Parameter identification and comparison of dynamical systems is a challenging task in many fields. Bayesian approaches based on Gaussian process regression over time-series data have been successfully applied to infer the parameters of a dynamical system without explicitly solving it. While the benefits in computational cost are well established, a rigorous mathematical framework has been missing. We offer a novel interpretation which leads to a better understanding and improvements in state-of-the-art performance in terms of accuracy for nonlinear dynamical systems.

More than 50 years ago Bongard introduced 100 visual concept learning problems as a testbed for intelligent vision systems. These problems are now known as Bongard problems. Although they are well known in the cognitive science and AI communities only moderate progress has been made towards building systems that can solve a substantial subset of them. In the system presented here, visual features are extracted through image processing and then translated into a symbolic visual vocabulary. We introduce a formal language that allows representing complex visual concepts based on this vocabulary. Using this language and Bayesian inference, complex visual concepts can be induced from the examples that are provided in each Bongard problem. Contrary to other concept learning problems the examples from which concepts are induced are not random in Bongard problems, instead they are carefully chosen to communicate the concept, hence requiring pragmatic reasoning. Taking pragmatic reasoning into account we find good agreement between the concepts with high posterior probability and the solutions formulated by Bongard himself. While this approach is far from solving all Bongard problems, it solves the biggest fraction yet.

Paula Parpart's research explores why sometimes simpler algorithms can outperform more complex algorithms. Since the 1970s, a rare point of agreement between Nobel Laureate Daniel Kahneman and prominent Max Planck director Gerd Gigerenzer has been that decision heuristics are an alternative to Bayesian rationality. In cognitive science and psychology, heuristics are decision making algorithms that follow a set of simple rules and deliberately ignore information in the input data. For example, when making real-world decisions such as choosing which coffee to buy or choosing which apartment to rent, there are potentially thousands of features that could play into the decision, but we usually do not have the time or memory capacity to use them all. In choosing between two apartments, instead of considering all available information sources such as proximity to work, proximity to schools, crime rates, neighbourhood sport facilities or market trends, a simple heuristic called "Take-The-Best" (Gigerenzer & Goldstein, 1996) would just rely on the first most important cue that is able to discriminate among the apartments, and ignore all other cues.

Probabilistic topic models are popular unsupervised learning methods, including probabilistic latent semantic indexing (pLSI) and latent Dirichlet allocation (LDA). By now, their training is implemented on general purpose computers (GPCs), which are flexible in programming but energy-consuming. Towards low-energy implementations, this paper investigates their training on an emerging hardware technology called the neuromorphic multi-chip systems (NMSs). NMSs are very effective for a family of algorithms called spiking neural networks (SNNs). We present three SNNs to train topic models. The first SNN is a batch algorithm combining the conventional collapsed Gibbs sampling (CGS) algorithm and an inference SNN to train LDA. The other two SNNs are online algorithms targeting at both energy- and storage-limited environments. The two online algorithms are equivalent with training LDA by using maximum-a-posterior estimation and maximizing the semi-collapsed likelihood, respectively. They use novel, tailored ordinary differential equations for stochastic optimization. We simulate the new algorithms and show that they are comparable with the GPC algorithms, while being suitable for NMS implementation. We also propose an extension to train pLSI and a method to prune the network to obey the limited fan-in of some NMSs.