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 Uncertainty


Best-scored Random Forest Density Estimation

arXiv.org Machine Learning

This paper presents a brand new nonparametric density estimation strategy named the best-scored random forest density estimation whose effectiveness is supported by both solid theoretical analysis and significant experimental performance. The terminology best-scored stands for selecting one density tree with the best estimation performance out of a certain number of purely random density tree candidates and we then name the selected one the best-scored random density tree. In this manner, the ensemble of these selected trees that is the best-scored random density forest can achieve even better estimation results than simply integrating trees without selection. From the theoretical perspective, by decomposing the error term into two, we are able to carry out the following analysis: First of all, we establish the consistency of the best-scored random density trees under $L_1$-norm. Secondly, we provide the convergence rates of them under $L_1$-norm concerning with three different tail assumptions, respectively. Thirdly, the convergence rates under $L_{\infty}$-norm is presented. Last but not least, we also achieve the above convergence rates analysis for the best-scored random density forest. When conducting comparative experiments with other state-of-the-art density estimation approaches on both synthetic and real data sets, it turns out that our algorithm has not only significant advantages in terms of estimation accuracy over other methods, but also stronger resistance to the curse of dimensionality.


A Bayesian Finite Mixture Model with Variable Selection for Data with Mixed-type Variables

arXiv.org Machine Learning

Finite mixture model is an important branch of clustering methods and can be applied on data sets with mixed types of variables. However, challenges exist in its applications. First, it typically relies on the EM algorithm which could be sensitive to the choice of initial values. Second, biomarkers subject to limits of detection (LOD) are common to encounter in clinical data, which brings censored variables into finite mixture model. Additionally, researchers are recently getting more interest in variable importance due to the increasing number of variables that become available for clustering. To address these challenges, we propose a Bayesian finite mixture model to simultaneously conduct variable selection, account for biomarker LOD and obtain clustering results. We took a Bayesian approach to obtain parameter estimates and the cluster membership to bypass the limitation of the EM algorithm. To account for LOD, we added one more step in Gibbs sampling to iteratively fill in biomarker values below or above LODs. In addition, we put a spike-and-slab type of prior on each variable to obtain variable importance. Simulations across various scenarios were conducted to examine the performance of this method. Real data application on electronic health records was also conducted.


Stein Point Markov Chain Monte Carlo

arXiv.org Machine Learning

An important task in machine learning and statistics is the approximation of a probability measure by an empirical measure supported on a discrete point set. Stein Points are a class of algorithms for this task, which proceed by sequentially minimising a Stein discrepancy between the empirical measure and the target and, hence, require the solution of a non-convex optimisation problem to obtain each new point. This paper removes the need to solve this optimisation problem by, instead, selecting each new point based on a Markov chain sample path. This significantly reduces the computational cost of Stein Points and leads to a suite of algorithms that are straightforward to implement. The new algorithms are illustrated on a set of challenging Bayesian inference problems, and rigorous theoretical guarantees of consistency are established.


Differentiable Approximation Bridges For Training Networks Containing Non-Differentiable Functions

arXiv.org Machine Learning

Modern neural network training relies on piece-wise (sub-)differentiable functions in order to use backpropation for efficient calculation of gradients. In this work, we introduce a novel method to allow for non-differentiable functions at intermediary layers of deep neural networks. We do so through the introduction of a differentiable approximation bridge (DAB) neural network which provides smooth approximations to the gradient of the non-differentiable function. We present strong empirical results (performing over 600 experiments) in three different domains: unsupervised (image) representation learning, image classification, and sequence sorting to demonstrate that our proposed method improves state of the art performance. We demonstrate that utilizing non-differentiable functions in unsupervised (image) representation learning improves reconstruction quality and posterior linear separability by 10%. We also observe an accuracy improvement of 77% in neural sequence sorting and a 25% improvement against the straight-through estimator [3] in an image classification setting with the sort non-linearity. This work enables the usage of functions that were previously not usable in neural networks.


Multi-fidelity classification using Gaussian processes: accelerating the prediction of large-scale computational models

arXiv.org Machine Learning

Machine learning techniques typically rely on large datasets to create accurate classifiers. However, there are situations when data is scarce and expensive to acquire. This is the case of studies that rely on state-of-the-art computational models which typically take days to run, thus hindering the potential of machine learning tools. In this work, we present a novel classifier that takes advantage of lower fidelity models and inexpensive approximations to predict the binary output of expensive computer simulations. We postulate an autoregressive model between the different levels of fidelity with Gaussian process priors. We adopt a fully Bayesian treatment for the hyper-parameters and use Markov Chain Mont Carlo samplers. We take advantage of the probabilistic nature of the classifier to implement active learning strategies. We also introduce a sparse approximation to enhance the ability of themulti-fidelity classifier to handle large datasets. We test these multi-fidelity classifiers against their single-fidelity counterpart with synthetic data, showing a median computational cost reduction of 23% for a target accuracy of 90%. In an application to cardiac electrophysiology, the multi-fidelity classifier achieves an F1 score, the harmonic mean of precision and recall, of 99.6% compared to 74.1% of a single-fidelity classifier when both are trained with 50 samples. In general, our results show that the multi-fidelity classifiers outperform their single-fidelity counterpart in terms of accuracy in all cases. We envision that this new tool will enable researchers to study classification problems that would otherwise be prohibitively expensive. Source code is available at https://github.com/fsahli/MFclass.


Importance Weighted Hierarchical Variational Inference

arXiv.org Machine Learning

Variational Inference is a powerful tool in the Bayesian modeling toolkit, however, its effectiveness is determined by the expressivity of the utilized variational distributions in terms of their ability to match the true posterior distribution. In turn, the expressivity of the variational family is largely limited by the requirement of having a tractable density function. To overcome this roadblock, we introduce a new family of variational upper bounds on a marginal log density in the case of hierarchical models (also known as latent variable models). We then give an upper bound on the Kullback-Leibler divergence and derive a family of increasingly tighter variational lower bounds on the otherwise intractable standard evidence lower bound for hierarchical variational distributions, enabling the use of more expressive approximate posteriors. We show that previously known methods, such as Hierarchical Variational Models, Semi-Implicit Variational Inference and Doubly Semi-Implicit Variational Inference can be seen as special cases of the proposed approach, and empirically demonstrate superior performance of the proposed method in a set of experiments.


Meta-learning of Sequential Strategies

arXiv.org Machine Learning

In this report we review memory-based meta-learning as a tool for building sample-efficient strategies that learn from past experience to adapt to any task within a target class. Our goal is to equip the reader with the conceptual foundations of this tool for building new, scalable agents that operate on broad domains. To do so, we present basic algorithmic templates for building near-optimal predictors and reinforcement learners which behave as if they had a probabilistic model that allowed them to efficiently exploit task structure. Furthermore, we recast memory-based meta-learning within a Bayesian framework, showing that the meta-learned strategies are near-optimal because they amortize Bayes-filtered data, where the adaptation is implemented in the memory dynamics as a state-machine of sufficient statistics. Essentially, memory-based meta-learning translates the hard problem of probabilistic sequential inference into a regression problem.


Optimal Control of Complex Systems through Variational Inference with a Discrete Event Decision Process

arXiv.org Artificial Intelligence

Complex social systems are composed of interconnected individuals whose interactions result in group behaviors. Optimal control of a real-world complex system has many applications, including road traffic management, epidemic prevention, and information dissemination. However, such real-world complex system control is difficult to achieve because of high-dimensional and non-linear system dynamics, and the exploding state and action spaces for the decision maker. Prior methods can be divided into two categories: simulation-based and analytical approaches. Existing simulation approaches have high-variance in Monte Carlo integration, and the analytical approaches suffer from modeling inaccuracy. We adopted simulation modeling in specifying the complex dynamics of a complex system, and developed analytical solutions for searching optimal strategies in a complex network with high-dimensional state-action space. To capture the complex system dynamics, we formulate the complex social network decision making problem as a discrete event decision process. To address the curse of dimensionality and search in high-dimensional state action spaces in complex systems, we reduce control of a complex system to variational inference and parameter learning, introduce Bethe entropy approximation, and develop an expectation propagation algorithm. Our proposed algorithm leads to higher system expected rewards, faster convergence, and lower variance of value function in a real-world transportation scenario than state-of-the-art analytical and sampling approaches.


Interval Valued Trapezoidal Neutrosophic Set for Prioritization of Non-functional Requirements

arXiv.org Artificial Intelligence

This paper discusses the trapezoidal fuzzy number(TrFN); Interval-valued intuitionistic fuzzy number(IVIFN); neutrosophic set and its operational laws; and, trapezoidal neutrosophic set(TrNS) and its operational laws. Based on the combination of IVIFN and TrNS, an Interval Valued Trapezoidal Neutrosophic Set (IVTrNS) is proposed followed by its operational laws. The paper also presents the score and accuracy functions for the proposed Interval Valued Trapezoidal Neutrosophic Number (IVTrNN). Then, an interval valued trapezoidal neutrosophic weighted arithmetic averaging (IVTrNWAA) operator is introduced to combine the trapezoidal information which is neutrosophic and in the unit interval of real numbers. Finally, a method is developed to handle the problems in the multi attribute decision making(MADM) environment using IVTrNWAA operator followed by a numerical example of NFRs prioritization to illustrate the relevance of the developed method.


Interpretable Outcome Prediction with Sparse Bayesian Neural Networks in Intensive Care

arXiv.org Machine Learning

Clinical decision making is challenging because of pathological complexity, as well as large amounts of heterogeneous data generated as part of routine clinical care. In recent years, machine learning tools have been developed to aid this process. Intensive care unit (ICU) admissions represent the most data dense and time-critical patient care episodes. In this context, prediction models may help clinicians determine which patients are most at risk and prioritize care. However, flexible tools such as artificial neural networks (ANNs) suffer from a lack of interpretability limiting their acceptability to clinicians. In this work, we propose a novel interpretable Bayesian neural network architecture which offers both the flexibility of ANNs and interpretability in terms of feature selection. In particular, we employ a sparsity inducing prior distribution in a tied manner to learn which features are important for outcome prediction. We evaluate our approach on the task of mortality prediction using two real-world ICU cohorts. In collaboration with clinicians we found that, in addition to the predicted outcome results, our approach can provide novel insights into the importance of different clinical measurements. This suggests that our model can support medical experts in their decision making process.