Uncertainty
Kernel autocovariance operators of stationary processes: Estimation and convergence
Mollenhauer, Mattes, Klus, Stefan, Schütte, Christof, Koltai, Péter
We consider autocovariance operators of a stationary stochastic process on a Polish space that is embedded into a reproducing kernel Hilbert space. We investigate how empirical estimates of these operators converge along realizations of the process under various conditions. In particular, we examine ergodic and strongly mixing processes and prove several asymptotic results as well as finite sample error bounds with a detailed analysis for the Gaussian kernel. We provide applications of our theory in terms of consistency results for kernel PCA with dependent data and the conditional mean embedding of transition probabilities. Finally, we use our approach to examine the nonparametric estimation of Markov transition operators and highlight how our theory can give a consistency analysis for a large family of spectral analysis methods including kernel-based dynamic mode decomposition.
Planning as Inference in Epidemiological Models
Wood, Frank, Warrington, Andrew, Naderiparizi, Saeid, Weilbach, Christian, Masrani, Vaden, Harvey, William, Scibior, Adam, Beronov, Boyan, Nasseri, Ali
In this work we demonstrate how existing software tools can be used to automate parts of infectious disease-control policy-making via performing inference in existing epidemiological dynamics models. The kind of inference tasks undertaken include computing, for planning purposes, the posterior distribution over putatively controllable, via direct policy-making choices, simulation model parameters that give rise to acceptable disease progression outcomes. Neither the full capabilities of such inference automation software tools nor their utility for planning is widely disseminated at the current time. Timely gains in understanding about these tools and how they can be used may lead to more fine-grained and less economically damaging policy prescriptions, particularly during the current COVID-19 pandemic.
Non-invasive modelling methodology for the diagnosis of Coronary Artery Disease using Fuzzy Cognitive Maps
Apostolopoulos, Ioannis, Groumpos, Peter
Cardiovascular Diseases (CVD) and strokes produce immense health and economic burdens globally. Coronary Artery Disease (CAD) is the most common type of cardiovascular disease. Coronary Angiography, which is an invasive treatment, is also the standard procedure for diagnosing CAD. In this work, we illustrate a Medical Decision Support System for the prediction of Coronary Artery Disease (CAD) utilizing Fuzzy Cognitive Maps (FCMs). FCMs are a promising modeling methodology, based on human knowledge, capable of dealing with ambiguity and uncertainty, and learning how to adapt to the unknown or changing environment. The newly proposed MDSS is developed using the basic notions of Fuzzy Logic and Fuzzy Cognitive Maps, with some adjustments to improve the results. The proposed model, tested on a labelled CAD dataset of 303 patients, obtains an accuracy of 78.2% outmatching several state-of-the-art classification algorithms.
General Identification of Dynamic Treatment Regimes Under Interference
Sherman, Eli, Arbour, David, Shpitser, Ilya
In many applied fields, researchers are often interested in tailoring treatments to unit-level characteristics in order to optimize an outcome of interest. Methods for identifying and estimating treatment policies are the subject of the dynamic treatment regime literature. Separately, in many settings the assumption that data are independent and identically distributed does not hold due to inter-subject dependence. The phenomenon where a subject's outcome is dependent on his neighbor's exposure is known as interference. These areas intersect in myriad real-world settings. In this paper we consider the problem of identifying optimal treatment policies in the presence of interference. Using a general representation of interference, via Lauritzen-Wermuth-Freydenburg chain graphs (Lauritzen and Richardson, 2002), we formalize a variety of policy interventions under interference and extend existing identification theory (Tian, 2008; Sherman and Shpitser, 2018). Finally, we illustrate the efficacy of policy maximization under interference in a simulation study.
Sum-product networks: A survey
París, Iago, Sánchez-Cauce, Raquel, Díez, Francisco Javier
A sum-product network (SPN) is a probabilistic model, based on a rooted acyclic directed graph, in which terminal nodes represent univariate probability distributions and non-terminal nodes represent convex combinations (weighted sums) and products of probability functions. They are closely related to probabilistic graphical models, in particular to Bayesian networks with multiple context-specific independencies. Their main advantage is the possibility of building tractable models from data, i.e., models that can perform several inference tasks in time proportional to the number of links in the graph. They are somewhat similar to neural networks and can address the same kinds of problems, such as image processing and natural language understanding. This paper offers a survey of SPNs, including their definition, the main algorithms for inference and learning from data, the main applications, a brief review of software libraries, and a comparison with related models
Deep transformation models: Tackling complex regression problems with neural network based transformation models
Sick, Beate, Hothorn, Torsten, Dürr, Oliver
We present a deep transformation model for probabilistic regression. Deep learning is known for outstandingly accurate predictions on complex data but in regression tasks, it is predominantly used to just predict a single number. This ignores the non-deterministic character of most tasks. Especially if crucial decisions are based on the predictions, like in medical applications, it is essential to quantify the prediction uncertainty. The presented deep learning transformation model estimates the whole conditional probability distribution, which is the most thorough way to capture uncertainty about the outcome. We combine ideas from a statistical transformation model (most likely transformation) with recent transformation models from deep learning (normalizing flows) to predict complex outcome distributions. The core of the method is a parameterized transformation function which can be trained with the usual maximum likelihood framework using gradient descent. The method can be combined with existing deep learning architectures. For small machine learning benchmark datasets, we report state of the art performance for most dataset and partly even outperform it. Our method works for complex input data, which we demonstrate by employing a CNN architecture on image data.
Bayesian ODE Solvers: The Maximum A Posteriori Estimate
Tronarp, Filip, Sarkka, Simo, Hennig, Philipp
It has recently been established that the numerical solution of ordinary differential equations can be posed as a nonlinear Bayesian inference problem, which can be approximately solved via Gaussian filtering and smoothing, whenever a Gauss--Markov prior is used. In this paper the class of $\nu$ times differentiable linear time invariant Gauss--Markov priors is considered. A taxonomy of Gaussian estimators is established, with the maximum a posteriori estimate at the top of the hierarchy, which can be computed with the iterated extended Kalman smoother. The remaining three classes are termed explicit, semi-implicit, and implicit, which are in similarity with the classical notions corresponding to conditions on the vector field, under which the filter update produces a local maximum a posteriori estimate. The maximum a posteriori estimate corresponds to an optimal interpolant in the reproducing Hilbert space associated with the prior, which in the present case is equivalent to a Sobolev space of smoothness $\nu+1$. Consequently, using methods from scattered data approximation and nonlinear analysis in Sobolev spaces, it is shown that the maximum a posteriori estimate converges to the true solution at a polynomial rate in the fill-distance (maximum step size) subject to mild conditions on the vector field. The methodology developed provides a novel and more natural approach to study the convergence of these estimators than classical methods of convergence analysis. The methods and theoretical results are demonstrated in numerical examples.
SUMO: Unbiased Estimation of Log Marginal Probability for Latent Variable Models
Luo, Yucen, Beatson, Alex, Norouzi, Mohammad, Zhu, Jun, Duvenaud, David, Adams, Ryan P., Chen, Ricky T. Q.
Standard variational lower bounds used to train latent variable models produce biased estimates of most quantities of interest. We introduce an unbiased estimator of the log marginal likelihood and its gradients for latent variable models based on randomized truncation of infinite series. If parameterized by an encoder-decoder architecture, the parameters of the encoder can be optimized to minimize its variance of this estimator. We show that models trained using our estimator give better test-set likelihoods than a standard importance-sampling based approach for the same average computational cost. This estimator also allows use of latent variable models for tasks where unbiased estimators, rather than marginal likelihood lower bounds, are preferred, such as minimizing reverse KL divergences and estimating score functions.
Mining International Political Norms from the GDELT Database
Murali, Rohit, Patnaik, Suravi, Cranefield, Stephen
Researchers have long been interested in the role that norms can play in governing agent actions in multi-agent systems. Much work has been done on formalising normative concepts from human society and adapting them for the government of open software systems, and on the simulation of normative processes in human and artificial societies. However, there has been comparatively little work on applying normative MAS mechanisms to understanding the norms in human society. This work investigates this issue in the context of international politics. Using the GDELT dataset, containing machine-encoded records of international events extracted from news reports, we extracted bilateral sequences of inter-country events and applied a Bayesian norm mining mechanism to identify norms that best explained the observed behaviour. A statistical evaluation showed that the normative model fitted the data significantly better than a probabilistic discrete event model.
Exact marginal inference in Latent Dirichlet Allocation
Assume we have potential "causes" $z\in Z$, which produce "events" $w$ with known probabilities $\beta(w|z)$. We observe $w_1,w_2,...,w_n$, what can we say about the distribution of the causes? A Bayesian estimate will assume a prior on distributions on $Z$ (we assume a Dirichlet prior) and calculate a posterior. An average over that posterior then gives a distribution on $Z$, which estimates how much each cause $z$ contributed to our observations. This is the setting of Latent Dirichlet Allocation, which can be applied e.g. to topics "producing" words in a document. In this setting usually the number of observed words is large, but the number of potential topics is small. We are here interested in applications with many potential "causes" (e.g. locations on the globe), but only a few observations. We show that the exact Bayesian estimate can be computed in linear time (and constant space) in $|Z|$ for a given upper bound on $n$ with a surprisingly simple formula. We generalize this algorithm to the case of sparse probabilities $\beta(w|z)$, in which we only need to assume that the tree width of an "interaction graph" on the observations is limited. On the other hand we also show that without such limitation the problem is NP-hard.