Uncertainty
Implicit encoding of prior probabilities in optimal neural populations
Optimal coding provides a guiding principle for understanding the representation of sensory variables in neural populations. Here we consider the influence of a prior probability distribution over sensory variables on the optimal allocation of cells and spikes in a neural population. We model the spikes of each cell as samples from an independent Poisson process with rate governed by an associated tuning curve. For this response model, we approximate the Fisher information in terms of the density and amplitude of the tuning curves, under the assumption that tuning width varies inversely with cell density. We consider a family of objective functions based on the expected value, over the sensory prior, of a functional of the Fisher information.
Mixture of time-warped trajectory models for movement decoding
Applications of Brain-Machine-Interfaces typically estimate user intent based on biological signals that are under voluntary control. For example, we might want to estimate how a patient with a paralyzed arm wants to move based on residual muscle activity. To solve such problems it is necessary to integrate obtained information over time. To do so, state of the art approaches typically use a probabilistic model of how the state, e.g. We wanted to further develop this approach using two intuitive insights: (1) At any given point of time there may be a small set of likely movement targets, potentially identified by the location of objects in the workspace or by gaze information from the user.
Approximate inference in continuous time Gaussian-Jump processes
We present a novel approach to inference in conditionally Gaussian continuous time stochastic processes, where the latent process is a Markovian jump process. We first consider the case of jump-diffusion processes, where the drift of a linear stochastic differential equation can jump at arbitrary time points. We derive partial differential equations for exact inference and present a very efficient mean field approximation. By introducing a novel lower bound on the free energy, we then generalise our approach to Gaussian processes with arbitrary covariance, such as the non-Markovian RBF covariance. We present results on both simulated and real data, showing that the approach is very accurate in capturing latent dynamics and can be useful in a number of real data modelling tasks.
Global seismic monitoring as probabilistic inference
The International Monitoring System (IMS) is a global network of sensors whose purpose is to identify potential violations of the Comprehensive Nuclear-Test-Ban Treaty (CTBT), primarily through detection and localization of seismic events. We report on the first stage of a project to improve on the current automated software system with a Bayesian inference system that computes the most likely global event history given the record of local sensor data. The new system, VISA (Vertically Integrated Seismological Analysis), is based on empirically calibrated, generative models of event occurrence, signal propagation, and signal detection. VISA exhibits significantly improved precision and recall compared to the current operational system and is able to detect events that are missed even by the human analysts who post-process the IMS output.
An Approximate Inference Approach to Temporal Optimization in Optimal Control
Algorithms based on iterative local approximations present a practical approach to optimal control in robotic systems. However, they generally require the temporal parameters (for e.g. the movement duration or the time point of reaching an intermediate goal) to be specified \textit{a priori}. Here, we present a methodology that is capable of jointly optimising the temporal parameters in addition to the control command profiles. The presented approach is based on a Bayesian canonical time formulation of the optimal control problem, with the temporal mapping from canonical to real time parametrised by an additional control variable. An approximate EM algorithm is derived that efficiently optimises both the movement duration and control commands offering, for the first time, a practical approach to tackling generic via point problems in a systematic way under the optimal control framework. The proposed approach is evaluated on simulations of a redundant robotic plant.
Approximate Inference by Compilation to Arithmetic Circuits
Arithmetic circuits (ACs) exploit context-specific independence and determinism to allow exact inference even in networks with high treewidth. In this paper, we introduce the first ever approximate inference methods using ACs, for domains where exact inference remains intractable. We propose and evaluate a variety of techniques based on exact compilation, forward sampling, AC structure learning, Markov network parameter learning, variational inference, and Gibbs sampling. In experiments on eight challenging real-world domains, we find that the methods based on sampling and learning work best: one such method (AC2-F) is faster and usually more accurate than loopy belief propagation, mean field, and Gibbs sampling; another (AC2-G) has a running time similar to Gibbs sampling but is consistently more accurate than all baselines.
A Bayesian Approach to Concept Drift
To cope with concept drift, we placed a probability distribution over the location of the most-recent drift point. We used Bayesian model comparison to update this distribution from the predictions of models trained on blocks of consecutive observations and pruned potential drift points with low probability. We compare our approach to a non-probabilistic method for drift and a probabilistic method for change-point detection. In our experiments, our approach generally yielded improved accuracy and/or speed over these other methods.
A New Probabilistic Model for Rank Aggregation
This paper is concerned with rank aggregation, which aims to combine multiple input rankings to get a better ranking. A popular approach to rank aggregation is based on probabilistic models on permutations, e.g., the Luce model and the Mallows model. However, these models have their limitations in either poor expressiveness or high computational complexity. To avoid these limitations, in this paper, we propose a new model, which is defined with a coset-permutation distance, and models the generation of a permutation as a stagewise process. We refer to the new model as coset-permutation distance based stagewise (CPS) model.
A Bayesian Framework for Figure-Ground Interpretation
Figure/ground assignment, in which the visual image is divided into nearer (figural) and farther (ground) surfaces, is an essential step in visual processing, but its underlying computational mechanisms are poorly understood. Figural assignment (often referred to as border ownership) can vary along a contour, suggesting a spatially distributed process whereby local and global cues are combined to yield local estimates of border ownership. In this paper we model figure/ground estimation in a Bayesian belief network, attempting to capture the propagation of border ownership across the image as local cues (contour curvature and T-junctions) interact with more global cues to yield a figure/ground assignment. Our network includes as a nonlocal factor skeletal (medial axis) structure, under the hypothesis that medial structure draws'' border ownership so that borders are owned by their interiors. We also briefly present a psychophysical experiment in which we measured local border ownership along a contour at various distances from an inducing cue (a T-junction).
PAC-Bayesian Model Selection for Reinforcement Learning
This paper introduces the first set of PAC-Bayesian bounds for the batch reinforcement learning problem in finite state spaces. These bounds hold regardless of the correctness of the prior distribution. We demonstrate how such bounds can be used for model-selection in control problems where prior information is available either on the dynamics of the environment, or on the value of actions. Our empirical results confirm that PAC-Bayesian model-selection is able to leverage prior distributions when they are informative and, unlike standard Bayesian RL approaches, ignores them when they are misleading.