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 Uncertainty


Transport map unadjusted Langevin algorithms: learning and discretizing perturbed samplers

arXiv.org Machine Learning

Langevin dynamics are widely used in sampling high-dimensional, non-Gaussian distributions whose densities are known up to a normalizing constant. In particular, there is strong interest in unadjusted Langevin algorithms (ULA), which directly discretize Langevin dynamics to estimate expectations over the target distribution. We study the use of transport maps that approximately normalize a target distribution as a way to precondition and accelerate the convergence of Langevin dynamics. We show that in continuous time, when a transport map is applied to Langevin dynamics, the result is a Riemannian manifold Langevin dynamics (RMLD) with metric defined by the transport map. We also show that applying a transport map to an irreversibly-perturbed ULA results in a geometry-informed irreversible perturbation (GiIrr) of the original dynamics. These connections suggest more systematic ways of learning metrics and perturbations, and also yield alternative discretizations of the RMLD described by the map, which we study. Under appropriate conditions, these discretized processes can be endowed with non-asymptotic bounds describing convergence to the target distribution in 2-Wasserstein distance. Illustrative numerical results complement our theoretical claims.


HyperBO+: Pre-training a universal prior for Bayesian optimization with hierarchical Gaussian processes

arXiv.org Machine Learning

Bayesian optimization (BO), while proved highly effective for many black-box function optimization tasks, requires practitioners to carefully select priors that well model their functions of interest. Rather than specifying by hand, researchers have investigated transfer learning based methods to automatically learn the priors, e.g. multi-task BO (Swersky et al., 2013), few-shot BO (Wistuba and Grabocka, 2021) and HyperBO (Wang et al., 2022). However, those prior learning methods typically assume that the input domains are the same for all tasks, weakening their ability to use observations on functions with different domains or generalize the learned priors to BO on different search spaces. In this work, we present HyperBO+: a pre-training approach for hierarchical Gaussian processes that enables the same prior to work universally for Bayesian optimization on functions with different domains. We propose a two-step pre-training method and analyze its appealing asymptotic properties and benefits to BO both theoretically and empirically. On real-world hyperparameter tuning tasks that involve multiple search spaces, we demonstrate that HyperBO+ is able to generalize to unseen search spaces and achieves lower regrets than competitive baselines.


Multi-unit soft sensing permits few-shot learning

arXiv.org Machine Learning

Recent literature has explored various ways to improve soft sensors using learning algorithms with transferability. Broadly put, the performance of a soft sensor may be strengthened when it is learned by solving multiple tasks. The usefulness of transferability depends on how strongly related the devised learning tasks are. A particularly relevant case for transferability, is when a soft sensor is to be developed for a process of which there are many realizations, e.g. system or device with many implementations from which data is available. Then, each realization presents a soft sensor learning task, and it is reasonable to expect that the different tasks are strongly related. Applying transferability in this setting leads to what we call multi-unit soft sensing, where a soft sensor models a process by learning from data from all of its realizations. This paper explores the learning abilities of a multi-unit soft sensor, which is formulated as a hierarchical model and implemented using a deep neural network. In particular, we investigate how well the soft sensor generalizes as the number of units increase. Using a large industrial dataset, we demonstrate that, when the soft sensor is learned from a sufficient number of tasks, it permits few-shot learning on data from new units. Surprisingly, regarding the difficulty of the task, few-shot learning on 1-3 data points often leads to a high performance on new units.


Bayesian Cram\'er-Rao Bound Estimation with Score-Based Models

arXiv.org Machine Learning

The Bayesian Cram\'er-Rao bound (CRB) provides a lower bound on the error of any Bayesian estimator under mild regularity conditions. It can be used to benchmark the performance of estimators, and provides a principled design metric for guiding system design and optimization. However, the Bayesian CRB depends on the prior distribution, which is often unknown for many problems of interest. This work develops a new data-driven estimator for the Bayesian CRB using score matching, a statistical estimation technique, to model the prior distribution. The performance of the estimator is analyzed in both the classical parametric modeling regime and the neural network modeling regime. In both settings, we develop novel non-asymptotic bounds on the score matching error and our Bayesian CRB estimator. Our proofs build on results from empirical process theory, including classical bounds and recently introduced techniques for characterizing neural networks, to address the challenges of bounding the score matching error. The performance of the estimator is illustrated empirically on a denoising problem example with a Gaussian mixture prior.


FOSA: Full Information Maximum Likelihood (FIML) Optimized Self-Attention Imputation for Missing Data

arXiv.org Artificial Intelligence

Effectively addressing missing values in data imputation is pivotal, particularly for intricate datasets. This study delves into the full information maximum likelihood (FIML) optimized self-attention (FOSA) framework, an innovative approach that amalgamates the strengths of FIML estimation with the capabilities of self-attention neural networks. Our methodology begins with an initial estimation of missing values via FIML, which is subsequently refined by leveraging the self-attention mechanism. Our comprehensive experiments on both simulated and real-world datasets underscore the pronounced advantages of FOSA over traditional FIML techniques, including encapsulating facets of accuracy, computational efficiency, and adaptability to diverse data structures. Intriguingly, even in cases where the structural equation model can be misspecified, leading to sub-optimal FIML estimates, the robust architecture of the FOSA self-attention component adeptly rectifies and optimizes the imputation outcomes. Our empirical tests reveal that FOSA consistently delivers commendable predictions even for approximately 40% random missingness, highlighting its robustness and potential for wide-scale applications in data imputation.


Compositional Sculpting of Iterative Generative Processes

arXiv.org Artificial Intelligence

High training costs of generative models and the need to fine-tune them for specific tasks have created a strong interest in model reuse and composition. A key challenge in composing iterative generative processes, such as GFlowNets and diffusion models, is that to realize the desired target distribution, all steps of the generative process need to be coordinated, and satisfy delicate balance conditions. In this work, we propose Compositional Sculpting: a general approach for defining compositions of iterative generative processes. We then introduce a method for sampling from these compositions built on classifier guidance. We showcase ways to accomplish compositional sculpting in both GFlowNets and diffusion models. We highlight two binary operations $\unicode{x2014}$ the harmonic mean ($p_1 \otimes p_2$) and the contrast ($p_1 \unicode{x25D1}\,p_2$) between pairs, and the generalization of these operations to multiple component distributions. We offer empirical results on image and molecular generation tasks.


Nonparametric estimation of a covariate-adjusted counterfactual treatment regimen response curve

arXiv.org Machine Learning

Flexible estimation of the mean outcome under a treatment regimen (i.e., value function) is the key step toward personalized medicine. We define our target parameter as a conditional value function given a set of baseline covariates which we refer to as a stratum based value function. We focus on semiparametric class of decision rules and propose a sieve based nonparametric covariate adjusted regimen-response curve estimator within that class. Our work contributes in several ways. First, we propose an inverse probability weighted nonparametrically efficient estimator of the smoothed regimen-response curve function. We show that asymptotic linearity is achieved when the nuisance functions are undersmoothed sufficiently. Asymptotic and finite sample criteria for undersmoothing are proposed. Second, using Gaussian process theory, we propose simultaneous confidence intervals for the smoothed regimen-response curve function. Third, we provide consistency and convergence rate for the optimizer of the regimen-response curve estimator; this enables us to estimate an optimal semiparametric rule. The latter is important as the optimizer corresponds with the optimal dynamic treatment regimen. Some finite-sample properties are explored with simulations.


Lossless Transformations and Excess Risk Bounds in Statistical Inference

arXiv.org Machine Learning

We study the excess minimum risk in statistical inference, defined as the difference between the minimum expected loss in estimating a random variable from an observed feature vector and the minimum expected loss in estimating the same random variable from a transformation (statistic) of the feature vector. After characterizing lossless transformations, i.e., transformations for which the excess risk is zero for all loss functions, we construct a partitioning test statistic for the hypothesis that a given transformation is lossless and show that for i.i.d. data the test is strongly consistent. More generally, we develop information-theoretic upper bounds on the excess risk that uniformly hold over fairly general classes of loss functions. Based on these bounds, we introduce the notion of a delta-lossless transformation and give sufficient conditions for a given transformation to be universally delta-lossless. Applications to classification, nonparametric regression, portfolio strategies, information bottleneck, and deep learning, are also surveyed.


Nonparametric plug-in classifier for multiclass classification of S.D.E. paths

arXiv.org Machine Learning

We study the multiclass classification problem where the features come from the mixture of time-homogeneous diffusions. Specifically, the classes are discriminated by their drift functions while the diffusion coefficient is common to all classes and unknown. In this framework, we build a plug-in classifier which relies on nonparametric estimators of the drift and diffusion functions. We first establish the consistency of our classification procedure under mild assumptions and then provide rates of cnvergence under different set of assumptions. Finally, a numerical study supports our theoretical findings.


Entropic Matching for Expectation Propagation of Markov Jump Processes

arXiv.org Machine Learning

This paper addresses the problem of statistical inference for latent continuous-time stochastic processes, which is often intractable, particularly for discrete state space processes described by Markov jump processes. To overcome this issue, we propose a new tractable inference scheme based on an entropic matching framework that can be embedded into the well-known expectation propagation algorithm. We demonstrate the effectiveness of our method by providing closed-form results for a simple family of approximate distributions and apply it to the general class of chemical reaction networks, which are a crucial tool for modeling in systems biology. Moreover, we derive closed form expressions for point estimation of the underlying parameters using an approximate expectation maximization procedure. We evaluate the performance of our method on various chemical reaction network instantiations, including a stochastic Lotka-Voltera example, and discuss its limitations and potential for future improvements. Our proposed approach provides a promising direction for addressing complex continuous-time Bayesian inference problems.