Bayesian Inference
What is the Bayesian theorem?
Bayesian is interactive representations of probabilistic interactions between a number of variables. They were designed to ease the presumption of independence in the Naïve Bayes and thus allow for the dependency of variables. The first example, assume I need to see whether God exists. Initially, I have to concur with some techniques to quantify it. Something like'in the event that God existed, at that point harmony, ought to be multiple times more probable than war'.
Simulating normalising constants with referenced thermodynamic integration: application to COVID-19 model selection
Hawryluk, Iwona, Mishra, Swapnil, Flaxman, Seth, Bhatt, Samir, Mellan, Thomas A.
Model selection is a fundamental part of Bayesian statistical inference; a widely used tool in the field of epidemiology. Simple methods such as Akaike Information Criterion are commonly used but they do not incorporate the uncertainty of the model's parameters, which can give misleading choices when comparing models with similar fit to the data. One approach to model selection in a more rigorous way that uses the full posterior distributions of the models is to compute the ratio of the normalising constants (or model evidence), known as Bayes factors. These normalising constants integrate the posterior distribution over all parameters and balance over and under fitting. However, normalising constants often come in the form of intractable, high-dimensional integrals, therefore special probabilistic techniques need to be applied to correctly estimate the Bayes factors. One such method is thermodynamic integration (TI), which can be used to estimate the ratio of two models' evidence by integrating over a continuous path between the two un-normalised densities. In this paper we introduce a variation of the TI method, here referred to as referenced TI, which computes a single model's evidence in an efficient way by using a reference density such as a multivariate normal - where the normalising constant is known. We show that referenced TI, an asymptotically exact Monte Carlo method of calculating the normalising constant of a single model, in practice converges to the correct result much faster than other competing approaches such as the method of power posteriors. We illustrate the implementation of the algorithm on informative 1- and 2-dimensional examples, and apply it to a popular linear regression problem, and use it to select parameters for a model of the COVID-19 epidemic in South Korea.
Bayesian Perceptron: Towards fully Bayesian Neural Networks
Artificial neural networks (NNs) have become the de facto standard in machine learning. They allow learning highly nonlinear transformations in a plethora of applications. However, NNs usually only provide point estimates without systematically quantifying corresponding uncertainties. In this paper a novel approach towards fully Bayesian NNs is proposed, where training and predictions of a perceptron are performed within the Bayesian inference framework in closed-form. The weights and the predictions of the perceptron are considered Gaussian random variables. Analytical expressions for predicting the perceptron's output and for learning the weights are provided for commonly used activation functions like sigmoid or ReLU. This approach requires no computationally expensive gradient calculations and further allows sequential learning.
Accelerating Online Reinforcement Learning with Offline Datasets
Nair, Ashvin, Dalal, Murtaza, Gupta, Abhishek, Levine, Sergey
Reinforcement learning provides an appealing formalism for learning control policies from experience. However, the classic active formulation of reinforcement learning necessitates a lengthy active exploration process for each behavior, making it difficult to apply in real-world settings. If we can instead allow reinforcement learning to effectively use previously collected data to aid the online learning process, where the data could be expert demonstrations or more generally any prior experience, we could make reinforcement learning a substantially more practical tool. While a number of recent methods have sought to learn offline from previously collected data, it remains exceptionally difficult to train a policy with offline data and improve it further with online reinforcement learning. In this paper we systematically analyze why this problem is so challenging, and propose a novel algorithm that combines sample-efficient dynamic programming with maximum likelihood policy updates, providing a simple and effective framework that is able to leverage large amounts of offline data and then quickly perform online fine-tuning of reinforcement learning policies. We show that our method enables rapid learning of skills with a combination of prior demonstration data and online experience across a suite of difficult dexterous manipulation and benchmark tasks.
Approximate learning of high dimensional Bayesian network structures via pruning of Candidate Parent Sets
Guo, Zhigao, Constantinou, Anthony C.
Score-based algorithms that learn Bayesian Network (BN) structures provide solutions ranging from different levels of approximate learning to exact learning. Approximate solutions exist because exact learning is generally not applicable to networks of moderate or higher complexity. In general, approximate solutions tend to sacrifice accuracy for speed, where the aim is to minimise the loss in accuracy and maximise the gain in speed. While some approximate algorithms are optimised to handle thousands of variables, these algorithms may still be unable to learn such high dimensional structures. Some of the most efficient score-based algorithms cast the structure learning problem as a combinatorial optimisation of candidate parent sets. This paper explores a strategy towards pruning the size of candidate parent sets, aimed at high dimensionality problems. The results illustrate how different levels of pruning affect the learning speed relative to the loss in accuracy in terms of model fitting, and show that aggressive pruning may be required to produce approximate solutions for high complexity problems.
Top 8 Open Source Tools For Bayesian Networks
Bayesian Network, also known as Bayes network is a probabilistic directed acyclic graphical model, which can be used for time series prediction, anomaly detection, diagnostics and more. In machine learning, the Bayesian inference is known for its robust set of tools for modelling any random variable, including the business performance indicators, the value of a regression parameter, among others. This method is also known as one of the best approaches to modelling uncertainty. In this article, we list down the top eight open-source tools for Bayesian Networks. Bayesian inference Using Gibbs Sampling or BUGS is a software package for the Bayesian analysis of statistical models by utilising the Markov chain Monte Carlo techniques.
Why you should try the Bayesian approach of A/B testing
"Critical thinking is an active and ongoing process. It requires that we all think like Bayesians, updating our knowledge as new information comes in." ― Daniel J. Levitin, A Field Guide to Lies: Critical Thinking in the Information Age Before we delve into the intuition behind using the Bayesian approach of estimation, we need to understand a few concepts. Inferential statistics is when you infer something about a whole population based on a sample of that population, as opposed to descriptive statistics which describes something about the whole population. When it comes to inferential statistics, there are two main philosophies: frequentist inference and Bayesian inference. The frequentist approach is known to be the more traditional approach to statistical inference, and thus studied more in most statistics courses (especially introductory courses). However, many would argue that the Bayesian approach is much closer to the way humans naturally perceive probability.
Generalization Error Bounds via $m$th Central Moments of the Information Density
Hellström, Fredrik, Durisi, Giuseppe
We present a general approach to deriving bounds on the generalization error of randomized learning algorithms. Our approach can be used to obtain bounds on the average generalization error as well as bounds on its tail probabilities, both for the case in which a new hypothesis is randomly generated every time the algorithm is used - as often assumed in the probably approximately correct (PAC)-Bayesian literature - and in the single-draw case, where the hypothesis is extracted only once. For this last scenario, we present a novel bound that is explicit in the central moments of the information density. The bound reveals that the higher the order of the information density moment that can be controlled, the milder the dependence of the generalization bound on the desired confidence level. Furthermore, we use tools from binary hypothesis testing to derive a second bound, which is explicit in the tail of the information density. This bound confirms that a fast decay of the tail of the information density yields a more favorable dependence of the generalization bound on the confidence level.
Bayesian Inverse Reinforcement Learning for Collective Animal Movement
Schafer, Toryn L. J., Wikle, Christopher K., Hooten, Mevin B.
Agent-based methods allow for defining simple rules that generate complex group behaviors. The governing rules of such models are typically set a priori and parameters are tuned from observed behavior trajectories. Instead of making simplifying assumptions across all anticipated scenarios, inverse reinforcement learning provides inference on the short-term (local) rules governing long term behavior policies by using properties of a Markov decision process. We use the computationally efficient linearly-solvable Markov decision process to learn the local rules governing collective movement for a simulation of the self propelled-particle (SPP) model and a data application for a captive guppy population. The estimation of the behavioral decision costs is done in a Bayesian framework with basis function smoothing. We recover the true costs in the SPP simulation and find the guppies value collective movement more than targeted movement toward shelter.
Convergence Rates of Empirical Bayes Posterior Distributions: A Variational Perspective
We study the convergence rates of empirical Bayes posterior distributions for nonparametric and high-dimensional inference. We show that as long as the hyperparameter set is discrete, the empirical Bayes posterior distribution induced by the maximum marginal likelihood estimator can be regarded as a variational approximation to a hierarchical Bayes posterior distribution. This connection between empirical Bayes and variational Bayes allows us to leverage the recent results in the variational Bayes literature, and directly obtains the convergence rates of empirical Bayes posterior distributions from a variational perspective. For a more general hyperparameter set that is not necessarily discrete, we introduce a new technique called "prior decomposition" to deal with prior distributions that can be written as convex combinations of probability measures whose supports are low-dimensional subspaces. This leads to generalized versions of the classical "prior mass and testing" conditions for the convergence rates of empirical Bayes. Our theory is applied to a number of statistical estimation problems including nonparametric density estimation and sparse linear regression.