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 Bayesian Inference


Deep Neural Network Based Ensemble learning Algorithms for the healthcare system (diagnosis of chronic diseases)

arXiv.org Artificial Intelligence

Diagnosis of chronic diseases and assistance in medical decisions is based on machine learning algorithms. In this paper, we review the classification algorithms used in the health care system (chronic diseases) and present the neural network-based Ensemble learning method. We briefly describe the commonly used algorithms and describe their critical properties. Materials and Methods: In this study, modern classification algorithms used in healthcare, examine the principles of these methods and guidelines, and to accurately diagnose and predict chronic diseases, superior machine learning algorithms with the neural network-based ensemble learning Is used. To do this, we use experimental data, real data on chronic patients (diabetes, heart, cancer) available on the UCI site. Results: We found that group algorithms designed to diagnose chronic diseases can be more effective than baseline algorithms. It also identifies several challenges to further advancing the classification of machine learning in the diagnosis of chronic diseases. Conclusion: The results show the high performance of the neural network-based Ensemble learning approach for the diagnosis and prediction of chronic diseases, which in this study reached 98.5, 99, and 100% accuracy, respectively.


VCNet and Functional Targeted Regularization For Learning Causal Effects of Continuous Treatments

arXiv.org Machine Learning

Motivated by the rising abundance of observational data with continuous treatments, we investigate the problem of estimating the average dose-response curve (ADRF). Available parametric methods are limited in their model space, and previous attempts in leveraging neural network to enhance model expressiveness relied on partitioning continuous treatment into blocks and using separate heads for each block; this however produces in practice discontinuous ADRFs. Therefore, the question of how to adapt the structure and training of neural network to estimate ADRFs remains open. This paper makes two important contributions. First, we propose a novel varying coefficient neural network (VCNet) that improves model expressiveness while preserving continuity of the estimated ADRF. Second, to improve finite sample performance, we generalize targeted regularization to obtain a doubly robust estimator of the whole ADRF curve. Continuous treatments arise in many fields, including healthcare, public policy, and economics. With the widespread accumulation of observational data, estimating the average dose-response function (ADRF) while correcting for confounders has become an important problem (Hirano & Imbens, 2004; Imai & Van Dyk, 2004; Kennedy et al., 2017; Fong et al., 2018). Recently, papers in causal inference (Johansson et al., 2016; Alaa & van der Schaar, 2017; Shalit et al., 2017; Schwab et al., 2019; Farrell et al., 2018; Shi et al., 2019) have utilized feed forward neural network for modeling.


RecSim NG: Toward Principled Uncertainty Modeling for Recommender Ecosystems

arXiv.org Artificial Intelligence

The development of recommender systems that optimize multi-turn interaction with users, and model the interactions of different agents (e.g., users, content providers, vendors) in the recommender ecosystem have drawn increasing attention in recent years. Developing and training models and algorithms for such recommenders can be especially difficult using static datasets, which often fail to offer the types of counterfactual predictions needed to evaluate policies over extended horizons. To address this, we develop RecSim NG, a probabilistic platform for the simulation of multi-agent recommender systems. RecSim NG is a scalable, modular, differentiable simulator implemented in Edward2 and TensorFlow. It offers: a powerful, general probabilistic programming language for agent-behavior specification; tools for probabilistic inference and latent-variable model learning, backed by automatic differentiation and tracing; and a TensorFlow-based runtime for running simulations on accelerated hardware. We describe RecSim NG and illustrate how it can be used to create transparent, configurable, end-to-end models of a recommender ecosystem, complemented by a small set of simple use cases that demonstrate how RecSim NG can help both researchers and practitioners easily develop and train novel algorithms for recommender systems.


Reinforcement Learning, Bit by Bit

arXiv.org Artificial Intelligence

Reinforcement learning agents have demonstrated remarkable achievements in simulated environments. Data efficiency poses an impediment to carrying this success over to real environments. The design of data-efficient agents calls for a deeper understanding of information acquisition and representation. We develop concepts and establish a regret bound that together offer principled guidance. The bound sheds light on questions of what information to seek, how to seek that information, and what information to retain. To illustrate concepts, we design simple agents that build on them and present computational results that demonstrate improvements in data efficiency. Other learning paradigms are about minimization; reinforcement learning is about maximization.


Problem-fluent models for complex decision-making in autonomous materials research

arXiv.org Machine Learning

We review our recent work in the area of autonomous materials research, highlighting the coupling of machine learning methods and models and more problem-aware modeling. We review the general Bayesian framework for closed-loop design employed by many autonomous materials platforms. We then provide examples of our work on such platforms. We finally review our approaches to extend current statistical and ML models to better reflect problem-specific structure including the use of physics-based models and incorporation of operational considerations into the decision-making procedure.


Causal Markov Boundaries

arXiv.org Machine Learning

Feature selection is an important problem in machine learning, which aims to select variables that lead to an optimal predictive model. In this paper, we focus on feature selection for post-intervention outcome prediction from pre-intervention variables. We are motivated by healthcare settings, where the goal is often to select the treatment that will maximize a specific patient's outcome; however, we often do not have sufficient randomized control trial data to identify well the conditional treatment effect. We show how we can use observational data to improve feature selection and effect estimation in two cases: (a) using observational data when we know the causal graph, and (b) when we do not know the causal graph but have observational and limited experimental data. Our paper extends the notion of Markov boundary to treatment-outcome pairs. We provide theoretical guarantees for the methods we introduce. In simulated data, we show that combining observational and experimental data improves feature selection and effect estimation.


Optimal sequential decision making with probabilistic digital twins

arXiv.org Machine Learning

Digital twins are emerging in many industries, typically consisting of simulation models and data associated with a specific physical system. One of the main reasons for developing a digital twin, is to enable the simulation of possible consequences of a given action, without the need to interfere with the physical system itself. Physical systems of interest, and the environments they operate in, do not always behave deterministically. Moreover, information about the system and its environment is typically incomplete or imperfect. Probabilistic representations of systems and environments may therefore be called for, especially to support decisions in application areas where actions may have severe consequences. In this paper we introduce the probabilistic digital twin (PDT). We will start by discussing how epistemic uncertainty can be treated using measure theory, by modelling epistemic information via $\sigma$-algebras. Based on this, we give a formal definition of how epistemic uncertainty can be updated in a PDT. We then study the problem of optimal sequential decision making. That is, we consider the case where the outcome of each decision may inform the next. Within the PDT framework, we formulate this optimization problem. We discuss how this problem may be solved (at least in theory) via the maximum principle method or the dynamic programming principle. However, due to the curse of dimensionality, these methods are often not tractable in practice. To mend this, we propose a generic approximate solution using deep reinforcement learning together with neural networks defined on sets. We illustrate the method on a practical problem, considering optimal information gathering for the estimation of a failure probability.


When Bayes, Ockham, and Shannon come together to define machine learning

#artificialintelligence

Thanks to my CS7641 class at Georgia Tech in my MS Analytics program, where I discovered this concept and was inspired to write about it. It is somewhat surprising that among all the high-flying buzzwords of machine learning, we don't hear much about the one phrase which fuses some of the core concepts of statistical learning, information theory, and natural philosophy into a single three-word-combo. Moreover, it is not just an obscure and pedantic phrase meant for machine learning (ML) Ph. It has a precise and easily accessible meaning for anyone interested to explore, and a practical pay-off for the practitioners of ML and data science. I am talking about the Minimum Description Length.


A hierarchical Bayesian model to find brain-behaviour associations in incomplete data sets

arXiv.org Machine Learning

Canonical Correlation Analysis (CCA) and its regularised versions have been widely used in the neuroimaging community to uncover multivariate associations between two data modalities (e.g., brain imaging and behaviour). However, these methods have inherent limitations: (1) statistical inferences about the associations are often not robust; (2) the associations within each data modality are not modelled; (3) missing values need to be imputed or removed. Group Factor Analysis (GFA) is a hierarchical model that addresses the first two limitations by providing Bayesian inference and modelling modality-specific associations. Here, we propose an extension of GFA that handles missing data, and highlight that GFA can be used as a predictive model. We applied GFA to synthetic and real data consisting of brain connectivity and non-imaging measures from the Human Connectome Project (HCP). In synthetic data, GFA uncovered the underlying shared and specific factors and predicted correctly the non-observed data modalities in complete and incomplete data sets. In the HCP data, we identified four relevant shared factors, capturing associations between mood, alcohol and drug use, cognition, demographics and psychopathological measures and the default mode, frontoparietal control, dorsal and ventral networks and insula, as well as two factors describing associations within brain connectivity. In addition, GFA predicted a set of non-imaging measures from brain connectivity. These findings were consistent in complete and incomplete data sets, and replicated previous findings in the literature. GFA is a promising tool that can be used to uncover associations between and within multiple data modalities in benchmark datasets (such as, HCP), and easily extended to more complex models to solve more challenging tasks.


A Variational Inference Framework for Inverse Problems

arXiv.org Machine Learning

We present a framework for fitting inverse problem models via variational Bayes approximations. This methodology guarantees flexibility to statistical model specification for a broad range of applications, good accuracy performances and reduced model fitting times, when compared with standard Markov chain Monte Carlo methods. The message passing and factor graph fragment approach to variational Bayes we describe facilitates streamlined implementation of approximate inference algorithms and forms the basis to software development. Such approach allows for supple inclusion of numerous response distributions and penalizations into the inverse problem model. Albeit our analysis is circumscribed to one- and two-dimensional response variables, we lay down an infrastructure where streamlining algorithmic steps based on nullifying weak interactions between variables are extendible to inverse problems in higher dimensions. Image processing applications motivated by biomedical and archaeological problems are included as illustrations.