Bayesian Inference
Variational EP with Probabilistic Backpropagation for Bayesian Neural Networks
I propose a novel approach for nonlinear Logistic regression using a two-layer neural network (NN) model structure with hierarchical priors on the network weights. I present a hybrid of expectation propagation called Variational Expectation Propagation approach (VEP) for approximate integration over the posterior distribution of the weights, the hierarchical scale parameters of the priors and zeta. Using a factorized posterior approximation I derive a computationally efficient algorithm, whose complexity scales similarly to an ensemble of independent sparse logistic models. The approach can be extended beyond standard activation functions and NN model structures to form flexible nonlinear binary predictors from multiple sparse linear models. I consider a hierarchical Bayesian model with logistic regression likelihood and a Gaussian prior distribution over the parameters called weights and hyperparameters. I work in the perspective of E step and M step for computing the approximating posterior and updating the parameters using the computed posterior respectively.
Bayesian Posterior Perturbation Analysis with Integral Probability Metrics
Garbuno-Inigo, Alfredo, Helin, Tapio, Hoffmann, Franca, Hosseini, Bamdad
In recent years, Bayesian inference in large-scale inverse problems found in science, engineering and machine learning has gained significant attention. This paper examines the robustness of the Bayesian approach by analyzing the stability of posterior measures in relation to perturbations in the likelihood potential and the prior measure. We present new stability results using a family of integral probability metrics (divergences) akin to dual problems that arise in optimal transport. Our results stand out from previous works in three directions: (1) We construct new families of integral probability metrics that are adapted to the problem at hand; (2) These new metrics allow us to study both likelihood and prior perturbations in a convenient way; and (3) our analysis accommodates likelihood potentials that are only locally Lipschitz, making them applicable to a wide range of nonlinear inverse problems. Our theoretical findings are further reinforced through specific and novel examples where the approximation rates of posterior measures are obtained for different types of perturbations and provide a path towards the convergence analysis of recently adapted machine learning techniques for Bayesian inverse problems such as data-driven priors and neural network surrogates.
Auxiliary MCMC and particle Gibbs samplers for parallelisable inference in latent dynamical systems
Corenflos, Adrien, Sรคrkkรค, Simo
We introduce two new classes of exact Markov chain Monte Carlo (MCMC) samplers for inference in latent dynamical models. The first one, which we coin auxiliary Kalman samplers, relies on finding a linear Gaussian state-space model approximation around the running trajectory corresponding to the state of the Markov chain. The second, that we name auxiliary particle Gibbs samplers corresponds to deriving good local proposals in an auxiliary Feynman--Kac model for use in particle Gibbs. Both samplers are controlled by augmenting the target distribution with auxiliary observations, resulting in an efficient Gibbs sampling routine. We discuss the relative statistical and computational performance of the samplers introduced, and show how to parallelise the auxiliary samplers along the time dimension. We illustrate the respective benefits and drawbacks of the resulting algorithms on classical examples from the particle filtering literature.
Generalized Cumulative Shrinkage Process Priors with Applications to Sparse Bayesian Factor Analysis
The paper discusses shrinkage priors which impose increasing shrinkage in a sequence of parameters. We review the cumulative shrinkage process (CUSP) prior of Legramanti et al. (2020), which is a spike-and-slab shrinkage prior where the spike probability is stochastically increasing and constructed from the stick-breaking representation of a Dirichlet process prior. As a first contribution, this CUSP prior is extended by involving arbitrary stick-breaking representations arising from beta distributions. As a second contribution, we prove that exchangeable spike-and-slab priors, which are popular and widely used in sparse Bayesian factor analysis, can be represented as a finite generalized CUSP prior, which is easily obtained from the decreasing order statistics of the slab probabilities. Hence, exchangeable spike-and-slab shrinkage priors imply increasing shrinkage as the column index in the loading matrix increases, without imposing explicit order constraints on the slab probabilities. An application to sparse Bayesian factor analysis illustrates the usefulness of the findings of this paper. A new exchangeable spike-and-slab shrinkage prior based on the triple gamma prior of Cadonna et al. (2020) is introduced and shown to be helpful for estimating the unknown number of factors in a simulation study.
Ensemble-based gradient inference for particle methods in optimization and sampling
Schillings, Claudia, Totzeck, Claudia, Wacker, Philipp
We propose an approach based on function evaluations and Bayesian inference to extract higher-order differential information of objective functions {from a given ensemble of particles}. Pointwise evaluation $\{V(x^i)\}_i$ of some potential $V$ in an ensemble $\{x^i\}_i$ contains implicit information about first or higher order derivatives, which can be made explicit with little computational effort (ensemble-based gradient inference -- EGI). We suggest to use this information for the improvement of established ensemble-based numerical methods for optimization and sampling such as Consensus-based optimization and Langevin-based samplers. Numerical studies indicate that the augmented algorithms are often superior to their gradient-free variants, in particular the augmented methods help the ensembles to escape their initial domain, to explore multimodal, non-Gaussian settings and to speed up the collapse at the end of optimization dynamics.} The code for the numerical examples in this manuscript can be found in the paper's Github repository (https://github.com/MercuryBench/ensemble-based-gradient.git).
Maximum Likelihood With a Time Varying Parameter
Lanconelli, Alberto, Lauria, Christopher S. A.
When estimating unknown parameters in a dynamic model the optimum solution to the parameter estimation problem may not remain constant. Specifically, the optimal values of the model parameters may change through time because of the evolution of the underlying process: finding them is, in general, not straightforward. A survey of basic techniques for tracking the time-varying dynamics of a system is provided in [Ljung and Gunnarsson, 1990] where recursive algorithms in non-stationary stochastic optimization are analysed under different assumptions about the true system's variations, see also [Simonetto et al., 2020] for a review in a purely deterministic setting. In [Delyon and Juditsky, 1995] the problem of tracking the random drifting parameters of a linear regression system is tackled, and [Zhu and Spall, 2016] builds a computable tracking error bound for how a stochastic approximation with constant gain keeps up with a non-stationary target. Successively, [Wilson et al., 2019] introduces a framework for sequentially solving convex stochastic minimization problems, where the distance between successive minimizers is bounded. The minimization problems are then solved by sequentially applying an optimization algorithm, such as stochastic gradient descent (SGD). In a similar setting, [Cao et al., 2019] establishes an upper bound on the regret of a projected SGD algorithm with respect to the drift of the dynamic optima, while [Cutler et al., 2021] provides novel non-asymptotic convergence guarantees for stochastic algorithms with iterate averaging.
On the Integration of Physics-Based Machine Learning with Hierarchical Bayesian Modeling Techniques
Sedehi, Omid, Kosikova, Antonina M., Papadimitriou, Costas, Katafygiotis, Lambros S.
Machine Learning (ML) has widely been used for modeling and predicting physical systems. These techniques offer high expressive power and good generalizability for interpolation within observed data sets. However, the disadvantage of black - box m odels is that they underperform under blind conditions since no physical knowledge is incorporated. Physics - based ML aims to address this problem by retaining the mathematical flexibility of ML techniques while incorporating physics. In accord, this paper proposes to embed mechanics - based models into the mean function of a Gaussian Process (GP) model and characterize potential discrepancies through kernel machines. A specific class of kernel function is promoted, which has a connection with the gradient of the physics - based model with respect to the input and parameters and shares similarity with the exact Auto - covariance function of linear dynamical systems. The spectral properties of the kernel function enable considering dominant periodic processes origin ating from physics misspecification. Nevertheless, the stationarity of the kernel function is a difficult hurdle in the sequential processing of long data sets, resolved through hierarchical Bayesian techniques. This implementation is also advantageous to mitigate computational costs, alleviating the scalability of GPs when dealing with sequential data. Using numerical and experimental examples, potential applications of the proposed method to structural dynamics inverse problems are demonstrated. Postdoctoral Fellow, Department of Civil and Environmental Engineering, The Hong Kong University of Science and Technology, Hong Kong, Email: osedehi@connect.ust.hk Ph.D. Student, Department of Civil and Environmental Engineering, The Hong Kong Universi ty of Science and Technology, Hong Kong, Email: akosikova@connect.ust.hk
Particle-based Online Bayesian Sampling
Yang, Yifan, Liu, Chang, Zhang, Zheng
Online learning has gained increasing interest due Online optimization methods can directly be applied to update to its capability of tracking real-world streaming models that are fully specified by a certain value of its data. Although it has been widely studied in the parameters. Beyond such models, there is another class of setting of frequentist statistics, few works have models known as Bayesian models that treat the parameters considered online learning with the Bayesian sampling as random variables, thus giving an output also as a random problem. In this paper, we study an Online variable (often the expectation is taken as the final output on Particle-based Variational Inference (OPVI) algorithm par with the conventional case). The stochasticity enables that updates a set of particles to gradually Bayesian models to provide diverse outputs, characterize approximate the Bayesian posterior. To reduce prediction uncertainty, and be more robust to adversarial the gradient error caused by the use of stochastic attacks (Hernรกndez-Lobato and Adams, 2015; Li and Gal, approximation, we include a sublinear increasing 2017; Yoon et al., 2018; Zhang et al., 2019; Tolpin et al., batch-size method to reduce the variance.
Dealing with Collinearity in Large-Scale Linear System Identification Using Gaussian Regression
Cao, Wenqi, Pillonetto, Gianluigi
Many problems arising in control require the determination of a mathematical model of the application. This has often to be performed starting from input-output data, leading to a task known as system identification in the engineering literature. One emerging topic in this field is estimation of networks consisting of several interconnected dynamic systems. We consider the linear setting assuming that system outputs are the result of many correlated inputs, hence making system identification severely ill-conditioned. This is a scenario often encountered when modeling complex cybernetics systems composed by many sub-units with feedback and algebraic loops. We develop a strategy cast in a Bayesian regularization framework where any impulse response is seen as realization of a zero-mean Gaussian process. Any covariance is defined by the so called stable spline kernel which includes information on smooth exponential decay. We design a novel Markov chain Monte Carlo scheme able to reconstruct the impulse responses posterior by efficiently dealing with collinearity. Our scheme relies on a variation of the Gibbs sampling technique: beyond considering blocks forming a partition of the parameter space, some other (overlapping) blocks are also updated on the basis of the level of collinearity of the system inputs. Theoretical properties of the algorithm are studied obtaining its convergence rate. Numerical experiments are included using systems containing hundreds of impulse responses and highly correlated inputs.
Sequential edge detection using joint hierarchical Bayesian learning
Xiao, Yao, Gelb, Anne, Song, Guohui
This paper introduces a new sparse Bayesian learning (SBL) algorithm that jointly recovers a temporal sequence of edge maps from noisy and under-sampled Fourier data. The new method is cast in a Bayesian framework and uses a prior that simultaneously incorporates intra-image information to promote sparsity in each individual edge map with inter-image information to promote similarities in any unchanged regions. By treating both the edges as well as the similarity between adjacent images as random variables, there is no need to separately form regions of change. Thus we avoid both additional computational cost as well as any information loss resulting from pre-processing the image. Our numerical examples demonstrate that our new method compares favorably with more standard SBL approaches.