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 Bayesian Inference


Machine Learning and Citizen Science Approaches for Monitoring the Changing Environment

arXiv.org Artificial Intelligence

This dissertation will combine new tools and methodologies to answer pressing questions regarding inundation area and hurricane events in complex, heterogeneous changing environments. In addition to remote sensing approaches, citizen science and machine learning are both emerging fields that harness advancing technology to answer environmental management and disaster response questions. Freshwater lakes supply a large amount of inland water resources to sustain local and regional developments. However, some lake systems depend upon great fluctuation in water surface area.


Personalized Decision Supports based on Theory of Mind Modeling and Explainable Reinforcement Learning

arXiv.org Artificial Intelligence

In this paper, we propose a novel personalized decision support system that combines Theory of Mind (ToM) modeling and explainable Reinforcement Learning (XRL) to provide effective and interpretable interventions. Our method leverages DRL to provide expert action recommendations while incorporating ToM modeling to understand users' mental states and predict their future actions, enabling appropriate timing for intervention. To explain interventions, we use counterfactual explanations based on RL's feature importance and users' ToM model structure. Our proposed system generates accurate and personalized interventions that are easily interpretable by end-users. We demonstrate the effectiveness of our approach through a series of crowd-sourcing experiments in a simulated team decision-making task, where our system outperforms control baselines in terms of task performance. Our proposed approach is agnostic to task environment and RL model structure, therefore has the potential to be generalized to a wide range of applications.


Bayesian Online Learning for Consensus Prediction

arXiv.org Machine Learning

Given a pre-trained classifier and multiple human experts, we investigate the task of online classification where model predictions are provided for free but querying humans incurs a cost. In this practical but under-explored setting, oracle ground truth is not available. Instead, the prediction target is defined as the consensus vote of all experts. Given that querying full consensus can be costly, we propose a general framework for online Bayesian consensus estimation, leveraging properties of the multivariate hypergeometric distribution. Based on this framework, we propose a family of methods that dynamically estimate expert consensus from partial feedback by producing a posterior over expert and model beliefs. Analyzing this posterior induces an interpretable trade-off between querying cost and classification performance. We demonstrate the efficacy of our framework against a variety of baselines on CIFAR-10H and ImageNet-16H, two large-scale crowdsourced datasets.


Minimax-optimal estimation for sparse multi-reference alignment with collision-free signals

arXiv.org Machine Learning

The Multi-Reference Alignment (MRA) problem aims at the recovery of an unknown signal from repeated observations under the latent action of a group of cyclic isometries, in the presence of additive noise of high intensity $\sigma$. It is a more tractable version of the celebrated cryo EM model. In the crucial high noise regime, it is known that its sample complexity scales as $\sigma^6$. Recent investigations have shown that for the practically significant setting of sparse signals, the sample complexity of the maximum likelihood estimator asymptotically scales with the noise level as $\sigma^4$. In this work, we investigate minimax optimality for signal estimation under the MRA model for so-called collision-free signals. In particular, this signal class covers the setting of generic signals of dilute sparsity (wherein the support size $s=O(L^{1/3})$, where $L$ is the ambient dimension. We demonstrate that the minimax optimal rate of estimation in for the sparse MRA problem in this setting is $\sigma^2/\sqrt{n}$, where $n$ is the sample size. In particular, this widely generalizes the sample complexity asymptotics for the restricted MLE in this setting, establishing it as the statistically optimal estimator. Finally, we demonstrate a concentration inequality for the restricted MLE on its deviations from the ground truth.


Synthetic Data: Can We Trust Statistical Estimators?

arXiv.org Machine Learning

The increasing interest in data sharing makes synthetic data appealing. However, the analysis of synthetic data raises a unique set of methodological challenges. In this work, we highlight the importance of inferential utility and provide empirical evidence against naive inference from synthetic data (that handles these as if they were really observed). We argue that the rate of false-positive findings (type 1 error) will be unacceptably high, even when the estimates are unbiased. One of the reasons is the underestimation of the true standard error, which may even progressively increase with larger sample sizes due to slower convergence. This is especially problematic for deep generative models. Before publishing synthetic data, it is essential to develop statistical inference tools for such data.


Characteristic Circuits

arXiv.org Machine Learning

In many real-world scenarios, it is crucial to be able to reliably and efficiently reason under uncertainty while capturing complex relationships in data. Probabilistic circuits (PCs), a prominent family of tractable probabilistic models, offer a remedy to this challenge by composing simple, tractable distributions into a high-dimensional probability distribution. However, learning PCs on heterogeneous data is challenging and densities of some parametric distributions are not available in closed form, limiting their potential use. We introduce characteristic circuits (CCs), a family of tractable probabilistic models providing a unified formalization of distributions over heterogeneous data in the spectral domain. The one-to-one relationship between characteristic functions and probability measures enables us to learn high-dimensional distributions on heterogeneous data domains and facilitates efficient probabilistic inference even when no closed-form density function is available. We show that the structure and parameters of CCs can be learned efficiently from the data and find that CCs outperform state-of-the-art density estimators for heterogeneous data domains on common benchmark data sets.


GP+: A Python Library for Kernel-based learning via Gaussian Processes

arXiv.org Machine Learning

In this paper we introduce GP+, an open-source library for kernel-based learning via Gaussian processes (GPs) which are powerful statistical models that are completely characterized by their parametric covariance and mean functions. GP+ is built on PyTorch and provides a user-friendly and object-oriented tool for probabilistic learning and inference. As we demonstrate with a host of examples, GP+ has a few unique advantages over other GP modeling libraries. We achieve these advantages primarily by integrating nonlinear manifold learning techniques with GPs' covariance and mean functions. As part of introducing GP+, in this paper we also make methodological contributions that (1) enable probabilistic data fusion and inverse parameter estimation, and (2) equip GPs with parsimonious parametric mean functions which span mixed feature spaces that have both categorical and quantitative variables. We demonstrate the impact of these contributions in the context of Bayesian optimization, multi-fidelity modeling, sensitivity analysis, and calibration of computer models.


Class Probability Matching Using Kernel Methods for Label Shift Adaptation

arXiv.org Machine Learning

In domain adaptation, covariate shift and label shift problems are two distinct and complementary tasks. In covariate shift adaptation where the differences in data distribution arise from variations in feature probabilities, existing approaches naturally address this problem based on \textit{feature probability matching} (\textit{FPM}). However, for label shift adaptation where the differences in data distribution stem solely from variations in class probability, current methods still use FPM on the $d$-dimensional feature space to estimate the class probability ratio on the one-dimensional label space. To address label shift adaptation more naturally and effectively, inspired by a new representation of the source domain's class probability, we propose a new framework called \textit{class probability matching} (\textit{CPM}) which matches two class probability functions on the one-dimensional label space to estimate the class probability ratio, fundamentally different from FPM operating on the $d$-dimensional feature space. Furthermore, by incorporating the kernel logistic regression into the CPM framework to estimate the conditional probability, we propose an algorithm called \textit{class probability matching using kernel methods} (\textit{CPMKM}) for label shift adaptation. From the theoretical perspective, we establish the optimal convergence rates of CPMKM with respect to the cross-entropy loss for multi-class label shift adaptation. From the experimental perspective, comparisons on real datasets demonstrate that CPMKM outperforms existing FPM-based and maximum-likelihood-based algorithms.


Compressive Recovery of Sparse Precision Matrices

arXiv.org Machine Learning

We consider the problem of learning a graph modeling the statistical relations of the $d$ variables from a dataset with $n$ samples $X \in \mathbb{R}^{n \times d}$. Standard approaches amount to searching for a precision matrix $\Theta$ representative of a Gaussian graphical model that adequately explains the data. However, most maximum likelihood-based estimators usually require storing the $d^{2}$ values of the empirical covariance matrix, which can become prohibitive in a high-dimensional setting. In this work, we adopt a compressive viewpoint and aim to estimate a sparse $\Theta$ from a \emph{sketch} of the data, i.e. a low-dimensional vector of size $m \ll d^{2}$ carefully designed from $X$ using non-linear random features. Under certain assumptions on the spectrum of $\Theta$ (or its condition number), we show that it is possible to estimate it from a sketch of size $m=\Omega\left((d+2k)\log(d)\right)$ where $k$ is the maximal number of edges of the underlying graph. These information-theoretic guarantees are inspired by compressed sensing theory and involve restricted isometry properties and instance optimal decoders. We investigate the possibility of achieving practical recovery with an iterative algorithm based on the graphical lasso, viewed as a specific denoiser. We compare our approach and graphical lasso on synthetic datasets, demonstrating its favorable performance even when the dataset is compressed.


The Choice of Noninformative Priors for Thompson Sampling in Multiparameter Bandit Models

arXiv.org Machine Learning

Thompson sampling (TS) has been known for its outstanding empirical performance supported by theoretical guarantees across various reward models in the classical stochastic multi-armed bandit problems. Nonetheless, its optimality is often restricted to specific priors due to the common observation that TS is fairly insensitive to the choice of the prior when it comes to asymptotic regret bounds. However, when the model contains multiple parameters, the optimality of TS highly depends on the choice of priors, which casts doubt on the generalizability of previous findings to other models. To address this gap, this study explores the impact of selecting noninformative priors, offering insights into the performance of TS when dealing with new models that lack theoretical understanding. We first extend the regret analysis of TS to the model of uniform distributions with unknown supports, which would be the simplest non-regular model. Our findings reveal that changing noninformative priors can significantly affect the expected regret, aligning with previously known results in other multiparameter bandit models. Although the uniform prior is shown to be optimal, we highlight the inherent limitation of its optimality, which is limited to specific parameterizations and emphasizes the significance of the invariance property of priors. In light of this limitation, we propose a slightly modified TS-based policy, called TS with Truncation (TS-T), which can achieve the asymptotic optimality for the Gaussian models and the uniform models by using the reference prior and the Jeffreys prior that are invariant under one-to-one reparameterizations. This policy provides an alternative approach to achieving optimality by employing fine-tuned truncation, which would be much easier than hunting for optimal priors in practice.