Bayesian Inference
The Surprising Effectiveness of SP Voting with Partial Preferences
Hosseini, Hadi, Mandal, Debmalya, Puhan, Amrit
We consider the problem of recovering the ground truth ordering (ranking, top-$k$, or others) over a large number of alternatives. The wisdom of crowd is a heuristic approach based on Condorcet's Jury theorem to address this problem through collective opinions. This approach fails to recover the ground truth when the majority of the crowd is misinformed. The surprisingly popular (SP) algorithm cite{prelec2017solution} is an alternative approach that is able to recover the ground truth even when experts are in minority. The SP algorithm requires the voters to predict other voters' report in the form of a full probability distribution over all rankings of alternatives. However, when the number of alternatives, $m$, is large, eliciting the prediction report or even the vote over $m$ alternatives might be too costly. In this paper, we design a scalable alternative of the SP algorithm which only requires eliciting partial preferences from the voters, and propose new variants of the SP algorithm. In particular, we propose two versions -- Aggregated-SP and Partial-SP -- that ask voters to report vote and prediction on a subset of size $k$ ($\ll m$) in terms of top alternative, partial rank, or an approval set. Through a large-scale crowdsourcing experiment on MTurk, we show that both of our approaches outperform conventional preference aggregation algorithms for the recovery of ground truth rankings, when measured in terms of Kendall-Tau distance and Spearman's $\rho$. We further analyze the collected data and demonstrate that voters' behavior in the experiment, including the minority of the experts, and the SP phenomenon, can be correctly simulated by a concentric mixtures of Mallows model. Finally, we provide theoretical bounds on the sample complexity of SP algorithms with partial rankings to demonstrate the theoretical guarantees of the proposed methods.
Bayesian Joint Additive Factor Models for Multiview Learning
Anceschi, Niccolo, Ferrari, Federico, Dunson, David B., Mallick, Himel
It is increasingly common in a wide variety of applied settings to collect data of multiple different types on the same set of samples. Our particular focus in this article is on studying relationships between such multiview features and responses. A motivating application arises in the context of precision medicine where multi-omics data are collected to correlate with clinical outcomes. It is of interest to infer dependence within and across views while combining multimodal information to improve the prediction of outcomes. The signal-to-noise ratio can vary substantially across views, motivating more nuanced statistical tools beyond standard late and early fusion. This challenge comes with the need to preserve interpretability, select features, and obtain accurate uncertainty quantification. We propose a joint additive factor regression model (JAFAR) with a structured additive design, accounting for shared and view-specific components. We ensure identifiability via a novel dependent cumulative shrinkage process (D-CUSP) prior. We provide an efficient implementation via a partially collapsed Gibbs sampler and extend our approach to allow flexible feature and outcome distributions. Prediction of time-to-labor onset from immunome, metabolome, and proteome data illustrates performance gains against state-of-the-art competitors. Our open-source software (R package) is available at https://github.com/niccoloanceschi/jafar.
Logistic Variational Bayes Revisited
Komodromos, Michael, Evangelou, Marina, Filippi, Sarah
Variational logistic regression is a popular method for approximate Bayesian inference seeing wide-spread use in many areas of machine learning including: Bayesian optimization, reinforcement learning and multi-instance learning to name a few. However, due to the intractability of the Evidence Lower Bound, authors have turned to the use of Monte Carlo, quadrature or bounds to perform inference, methods which are costly or give poor approximations to the true posterior. In this paper we introduce a new bound for the expectation of softplus function and subsequently show how this can be applied to variational logistic regression and Gaussian process classification. Unlike other bounds, our proposal does not rely on extending the variational family, or introducing additional parameters to ensure the bound is tight. In fact, we show that this bound is tighter than the state-of-the-art, and that the resulting variational posterior achieves state-of-the-art performance, whilst being significantly faster to compute than Monte-Carlo methods.
Is In-Context Learning in Large Language Models Bayesian? A Martingale Perspective
Falck, Fabian, Wang, Ziyu, Holmes, Chris
In-context learning (ICL) has emerged as a particularly remarkable characteristic of Large Language Models (LLM): given a pretrained LLM and an observed dataset, LLMs can make predictions for new data points from the same distribution without fine-tuning. Numerous works have postulated ICL as approximately Bayesian inference, rendering this a natural hypothesis. In this work, we analyse this hypothesis from a new angle through the martingale property, a fundamental requirement of a Bayesian learning system for exchangeable data. We show that the martingale property is a necessary condition for unambiguous predictions in such scenarios, and enables a principled, decomposed notion of uncertainty vital in trustworthy, safety-critical systems. We derive actionable checks with corresponding theory and test statistics which must hold if the martingale property is satisfied. We also examine if uncertainty in LLMs decreases as expected in Bayesian learning when more data is observed. In three experiments, we provide evidence for violations of the martingale property, and deviations from a Bayesian scaling behaviour of uncertainty, falsifying the hypothesis that ICL is Bayesian.
Modelling financial volume curves with hierarchical Poisson processes
Heaukulani, Creighton, Pandey, Abhinav, James, Lancelot F.
Modeling the trading volume curves of financial instruments throughout the day is of key interest in financial trading applications. Predictions of these so-called volume profiles guide trade execution strategies, for example, a common strategy is to trade a desired quantity across many orders in line with the expected volume curve throughout the day so as not to impact the price of the instrument. The volume curves (for each day) are naturally grouped by stock and can be further gathered into higher-level groupings, such as by industry. In order to model such admixtures of volume curves, we introduce a hierarchical Poisson process model for the intensity functions of admixtures of inhomogenous Poisson processes, which represent the trading times of the stock throughout the day. The model is based on the hierarchical Dirichlet process, and an efficient Markov Chain Monte Carlo (MCMC) algorithm is derived following the slice sampling framework for Bayesian nonparametric mixture models. We demonstrate the method on datasets of different stocks from the Trade and Quote repository maintained by Wharton Research Data Services, including the most liquid stock on the NASDAQ stock exchange, Apple, demonstrating the scalability of the approach.
Robust Visual Tracking via Iterative Gradient Descent and Threshold Selection
Qi, Zhuang, Zhang, Junlin, Qi, Xin
Visual tracking fundamentally involves regressing the state of the target in each frame of a video. Despite significant progress, existing regression-based trackers still tend to experience failures and inaccuracies. To enhance the precision of target estimation, this paper proposes a tracking technique based on robust regression. Firstly, we introduce a novel robust linear regression estimator, which achieves favorable performance when the error vector follows i.i.d Gaussian-Laplacian distribution. Secondly, we design an iterative process to quickly solve the problem of outliers. In fact, the coefficients are obtained by Iterative Gradient Descent and Threshold Selection algorithm (IGDTS). In addition, we expend IGDTS to a generative tracker, and apply IGDTS-distance to measure the deviation between the sample and the model. Finally, we propose an update scheme to capture the appearance changes of the tracked object and ensure that the model is updated correctly. Experimental results on several challenging image sequences show that the proposed tracker outperformance existing trackers.
SimPro: A Simple Probabilistic Framework Towards Realistic Long-Tailed Semi-Supervised Learning
Du, Chaoqun, Han, Yizeng, Huang, Gao
Recent advancements in semi-supervised learning have focused on a more realistic yet challenging task: addressing imbalances in labeled data while the class distribution of unlabeled data remains both unknown and potentially mismatched. Current approaches in this sphere often presuppose rigid assumptions regarding the class distribution of unlabeled data, thereby limiting the adaptability of models to only certain distribution ranges. In this study, we propose a novel approach, introducing a highly adaptable framework, designated as SimPro, which does not rely on any predefined assumptions about the distribution of unlabeled data. Our framework, grounded in a probabilistic model, innovatively refines the expectation-maximization (EM) algorithm by explicitly decoupling the modeling of conditional and marginal class distributions. This separation facilitates a closed-form solution for class distribution estimation during the maximization phase, leading to the formulation of a Bayes classifier. The Bayes classifier, in turn, enhances the quality of pseudo-labels in the expectation phase. Remarkably, the SimPro framework not only comes with theoretical guarantees but also is straightforward to implement. Moreover, we introduce two novel class distributions broadening the scope of the evaluation. Our method showcases consistent state-of-the-art performance across diverse benchmarks and data distribution scenarios. Our code is available at https://github.com/LeapLabTHU/SimPro.
A Structured Review of Literature on Uncertainty in Machine Learning & Deep Learning
Fakour, Fahimeh, Mosleh, Ali, Ramezani, Ramin
The adaptation and use of Machine Learning (ML) in our daily lives has led to concerns in lack of transparency, privacy, reliability, among others. As a result, we are seeing research in niche areas such as interpretability, causality, bias and fairness, and reliability. In this survey paper, we focus on a critical concern for adaptation of ML in risk-sensitive applications, namely understanding and quantifying uncertainty. Our paper approaches this topic in a structured way, providing a review of the literature in the various facets that uncertainty is enveloped in the ML process. We begin by defining uncertainty and its categories (e.g., aleatoric and epistemic), understanding sources of uncertainty (e.g., data and model), and how uncertainty can be assessed in terms of uncertainty quantification techniques (Ensembles, Bayesian Neural Networks, etc.). As part of our assessment and understanding of uncertainty in the ML realm, we cover metrics for uncertainty quantification for a single sample, dataset, and metrics for accuracy of the uncertainty estimation itself. This is followed by discussions on calibration (model and uncertainty), and decision making under uncertainty. Thus, we provide a more complete treatment of uncertainty: from the sources of uncertainty to the decision-making process. We have focused the review of uncertainty quantification methods on Deep Learning (DL), while providing the necessary background for uncertainty discussion within ML in general. Key contributions in this review are broadening the scope of uncertainty discussion, as well as an updated review of uncertainty quantification methods in DL.
Unleashing the Potential of Diffusion Models for Incomplete Data Imputation
Zhang, Hengrui, Fang, Liancheng, Yu, Philip S.
This paper introduces DiffPuter, an iterative method for missing data imputation that leverages the Expectation-Maximization (EM) algorithm and Diffusion Models. By treating missing data as hidden variables that can be updated during model training, we frame the missing data imputation task as an EM problem. During the M-step, DiffPuter employs a diffusion model to learn the joint distribution of both the observed and currently estimated missing data. In the E-step, DiffPuter re-estimates the missing data based on the conditional probability given the observed data, utilizing the diffusion model learned in the M-step. Starting with an initial imputation, DiffPuter alternates between the M-step and E-step until convergence. Through this iterative process, DiffPuter progressively refines the complete data distribution, yielding increasingly accurate estimations of the missing data. Our theoretical analysis demonstrates that the unconditional training and conditional sampling processes of the diffusion model align precisely with the objectives of the M-step and E-step, respectively. Empirical evaluations across 10 diverse datasets and comparisons with 16 different imputation methods highlight DiffPuter's superior performance. Notably, DiffPuter achieves an average improvement of 8.10% in MAE and 5.64% in RMSE compared to the most competitive existing method.
Learning Syntax Without Planting Trees: Understanding When and Why Transformers Generalize Hierarchically
Ahuja, Kabir, Balachandran, Vidhisha, Panwar, Madhur, He, Tianxing, Smith, Noah A., Goyal, Navin, Tsvetkov, Yulia
Natural language is structured hierarchically: words are grouped into phrases or constituents, which can be further grouped to form higher-level phrases up to the full sentence. How well do the neural network models trained on language data learn this phrase structure of human language has been a subject of great interest. A flurry of past work have shown that syntax trees can be recovered from recurrent neural network (RNN) and transformer-based models trained on large-scale language corpora (Tenney et al., 2019, Peters et al., 2018, Lin et al., 2019, Wu et al., 2020). While these studies provide useful evidence of the aforementioned phenomenon, they do not shed light on the architectural choices, training paradigms or dataset characteristics that lead models to learn the phrase structure of language. A useful tool to understand these model and dataset specific properties is through the test for hierarchical generalization, i.e., evaluating the capability of a model to generalize to novel syntactic forms, which were unseen during training. A classic problem to test for hierarchical generalization is question formation, where given a declarative sentence, e.g., My walrus does move the dogs that do wait., the task is to transform it into a question: Does my walrus move the dogs that do wait? The task is accomplished by moving one auxiliary verb to the front. The correct choice to move does in this example (rather than do), is predicted both by a hierarchical rule based on the phrase-structure syntax of the sentence, and by a linear rule that says to move the first auxiliary. Hence, as a test for hierarchical generalization, we can ask, for neural networks trained from scratch on data that is consistent with both hierarchical and linear rules (i.e.,