With the prevailing efforts to combat the coronavirus disease 2019 (COVID-19) pandemic, there are still uncertainties that are yet to be discovered about its spread, future impact, and resurgence. In this paper, we present a three-stage data-driven approach to distill the hidden information about COVID-19. The first stage employs a Bayesian network structure learning method to identify the causal relationships among COVID-19 symptoms and their intrinsic demographic variables. As a second stage, the output from the Bayesian network structure learning, serves as a useful guide to train an unsupervised machine learning (ML) algorithm that uncovers the similarities in patients' symptoms through clustering. The final stage then leverages the labels obtained from clustering to train a demographic symptom identification (DSID) model which predicts a patient's symptom class and the corresponding demographic probability distribution. We applied our method on the COVID-19 dataset obtained from the Centers for Disease Control and Prevention (CDC) in the United States. Results from the experiments show a testing accuracy of 99.99%, as against the 41.15% accuracy of a heuristic ML method. This strongly reveals the viability of our Bayesian network and ML approach in understanding the relationship between the virus symptoms, and providing insights on patients' stratification towards reducing the severity of the virus.

Traditional regression and prediction tasks often only provide deterministic point estimates. To estimate the uncertainty or distribution information of the response variable, methods such as Bayesian inference, model ensembling, or MC Dropout are typically used. These methods either assume that the posterior distribution of samples follows a Gaussian process or require thousands of forward passes for sample generation. We propose a novel approach called DistPred for regression and forecasting tasks, which overcomes the limitations of existing methods while remaining simple and powerful. Specifically, we transform proper scoring rules that measure the discrepancy between the predicted distribution and the target distribution into a differentiable discrete form and use it as a loss function to train the model end-to-end. This allows the model to sample numerous samples in a single forward pass to estimate the potential distribution of the response variable. We have compared our method with several existing approaches on multiple datasets and achieved state-of-the-art performance. Additionally, our method significantly improves computational efficiency. For example, compared to state-of-the-art models, DistPred has a 90x faster inference speed. Experimental results can be reproduced through https://github.com/Anoise/DistPred.

What in dynamical systems is called a bifurcation, in a laboratory setting (or in nature) is perceived as a qualitative change in the long-term observed dynamic behavior, sometimes dramatic. Pinpointing the location of these phenomena in state parameter space, and deciphering the nature of the underlying transitions, has been the focus of significant scientific effort for decades, e.g. in Biology [21, 17, 26, 54, 62, 32, 15]) or Chemistry [1, 48, 18, 76, 11, 46, 37]. In fact, accurate location of bifurcation points remains an active field of research computationally and experimentally [3]. When a reliable mathematical model is available, one can locate bifurcations either analytically (if the model is simple enough) or through scientific computing, e.g. in the context of numerical continuation. Such approaches reduce to the numerical solution of a system of (deterministic) equations that characterize bifurcations of a certain type [19, 13, 41].

Large language models (LLMs) can adapt to new tasks through in-context learning (ICL) based on a few examples presented in dialogue history without any model parameter update. Despite such convenience, the performance of ICL heavily depends on the quality of the in-context examples presented, which makes the in-context example selection approach a critical choice. This paper proposes a novel Bayesian in-Context example Selection method (ByCS) for ICL. Extending the inference probability conditioned on in-context examples based on Bayes' theorem, ByCS focuses on the inverse inference conditioned on test input. Following the assumption that accurate inverse inference probability (likelihood) will result in accurate inference probability (posterior), in-context examples are selected based on their inverse inference results. Diverse and extensive cross-tasking and cross-modality experiments are performed with speech, text, and image examples. Experimental results show the efficacy and robustness of our ByCS method on various models, tasks and modalities.

Causal discovery is crucial for understanding complex systems and informing decisions. While observational data can uncover causal relationships under certain assumptions, it often falls short, making active interventions necessary. Current methods, such as Bayesian and graph-theoretical approaches, do not prioritize decision-making and often rely on ideal conditions or information gain, which is not directly related to hypothesis testing. We propose a novel Bayesian optimization-based method inspired by Bayes factors that aims to maximize the probability of obtaining decisive and correct evidence. Our approach uses observational data to estimate causal models under different hypotheses, evaluates potential interventions pre-experimentally, and iteratively updates priors to refine interventions. We demonstrate the effectiveness of our method through various experiments. Our contributions provide a robust framework for efficient causal discovery through active interventions, enhancing the practical application of theoretical advancements.

This paper presents Neural Visibility Field (NVF), a novel uncertainty quantification method for Neural Radiance Fields (NeRF) applied to active mapping. Our key insight is that regions not visible in the training views lead to inherently unreliable color predictions by NeRF at this region, resulting in increased uncertainty in the synthesized views. To address this, we propose to use Bayesian Networks to composite position-based field uncertainty into ray-based uncertainty in camera observations. Consequently, NVF naturally assigns higher uncertainty to unobserved regions, aiding robots to select the most informative next viewpoints. Extensive evaluations show that NVF excels not only in uncertainty quantification but also in scene reconstruction for active mapping, outperforming existing methods.

Differentiable causal discovery has made significant advancements in the learning of directed acyclic graphs. However, its application to real-world datasets remains restricted due to the ubiquity of latent confounders and the requirement to learn maximal ancestral graphs (MAGs). To date, existing differentiable MAG learning algorithms have been limited to small datasets and failed to scale to larger ones (e.g., with more than 50 variables). The key insight in this paper is that the causal skeleton, which is the undirected version of the causal graph, has potential for improving accuracy and reducing the search space of the optimization procedure, thereby enhancing the performance of differentiable causal discovery. Therefore, we seek to address a two-fold challenge to harness the potential of the causal skeleton for differentiable causal discovery in the presence of latent confounders: (1) scalable and accurate estimation of skeleton and (2) universal integration of skeleton estimation with differentiable causal discovery. To this end, we propose SPOT (Skeleton Posterior-guided OpTimization), a two-phase framework that harnesses skeleton posterior for differentiable causal discovery in the presence of latent confounders. On the contrary to a ``point-estimation'', SPOT seeks to estimate the posterior distribution of skeletons given the dataset. It first formulates the posterior inference as an instance of amortized inference problem and concretizes it with a supervised causal learning (SCL)-enabled solution to estimate the skeleton posterior. To incorporate the skeleton posterior with differentiable causal discovery, SPOT then features a skeleton posterior-guided stochastic optimization procedure to guide the optimization of MAGs. [abridged due to length limit]

Hyperbolic models can reproduce the heavy-tailed degree distribution, high clustering, and hierarchical structure of empirical networks. Current algorithms for finding the hyperbolic coordinates of networks, however, do not quantify uncertainty in the inferred coordinates. We present BIGUE, a Markov chain Monte Carlo (MCMC) algorithm that samples the posterior distribution of a Bayesian hyperbolic random graph model. We show that combining random walk and random cluster transformations significantly improves mixing compared to the commonly used and state-of-the-art dynamic Hamiltonian Monte Carlo algorithm. Using this algorithm, we also provide evidence that the posterior distribution cannot be approximated by a multivariate normal distribution, thereby justifying the use of MCMC to quantify the uncertainty of the inferred parameters.

Over the last ten years, the realm of Artificial Intelligence (AI) has experienced an explosion of revolutionary breakthroughs, transforming what seemed like a far-off dream into a reality that is now deeply embedded in our everyday lives. AI's widespread impact is revolutionizing virtually all aspects of human life, and software engineering (SE) is no exception. As we explore this changing landscape, we are faced with questions about what the future holds for SE and how AI will reshape the roles, duties, and methodologies within the field. The introduction of these groundbreaking technologies highlights the inevitable shift towards a new paradigm, suggesting a future where AI's capabilities may redefine the boundaries of SE, potentially even more than human input. In this paper, we aim at outlining the key elements that, based on our expertise, are vital for the smooth integration of AI into SE, all while preserving the intrinsic human creativity that has been the driving force behind the field. First, we provide a brief description of SE and AI evolution. Afterward, we delve into the intricate interplay between AI-driven automation and human innovation, exploring how these two components can work together to advance SE practices to new methods and standards.

The data augmentation (DA) algorithms are popular Markov chain Monte Carlo (MCMC) algorithms often used for sampling from intractable probability distributions. This review article comprehensively surveys DA MCMC algorithms, highlighting their theoretical foundations, methodological implementations, and diverse applications in frequentist and Bayesian statistics. The article discusses tools for studying the convergence properties of DA algorithms. Furthermore, it contains various strategies for accelerating the speed of convergence of the DA algorithms, different extensions of DA algorithms and outlines promising directions for future research. This paper aims to serve as a resource for researchers and practitioners seeking to leverage data augmentation techniques in MCMC algorithms by providing key insights and synthesizing recent developments.