Based on the framework of Conformal Prediction (CP), we study the online construction of valid confidence sets given a black-box machine learning model. By converting the target confidence levels into quantile levels, the problem can be reduced to predicting the quantiles (in hindsight) of a sequentially revealed data sequence. Two very different approaches have been studied previously. (i) Direct approach: Assuming the data sequence is iid or exchangeable, one could maintain the empirical distribution of the observed data as an algorithmic belief, and directly predict its quantiles. (ii) Indirect approach: As statistical assumptions often do not hold in practice, a recent trend is to consider the adversarial setting and apply first-order online optimization to moving quantile losses (Gibbs & Cand\`es, 2021). It requires knowing the target quantile level beforehand, and suffers from certain validity issues on the obtained confidence sets, due to the associated loss linearization. This paper presents a novel Bayesian CP framework that combines their strengths. Without any statistical assumption, it is able to both: (i) answer multiple arbitrary confidence level queries online, with provably low regret; and (ii) overcome the validity issues suffered by first-order optimization baselines, due to being "data-centric" rather than "iterate-centric". From a technical perspective, our key idea is to regularize the algorithmic belief of the above direct approach by a Bayesian prior, which "robustifies" it by simulating a non-linearized Follow the Regularized Leader (FTRL) algorithm on the output. For statisticians, this can be regarded as an online adversarial view of Bayesian inference. Importantly, the proposed belief update backbone is shared by prediction heads targeting different confidence levels, bringing practical benefits analogous to U-calibration (Kleinberg et al., 2023).

A new model, named as deep dynamic poisson factorization model, is proposed in this paper for analyzing sequential count vectors. The model based on the Poisson Factor Analysis method captures dependence among time steps by neural networks, representing the implicit distributions. Local complicated relationship is obtained from local implicit distribution, and deep latent structure is exploited to get the long-time dependence. Variational inference on latent variables and gradient descent based on the loss functions derived from variational distribution is performed in our inference. Synthetic datasets and real-world datasets are applied to the proposed model and our results show good predicting and fitting performance with interpretable latent structure.

Learning directed acyclic graphs using both observational and interventional data is now a fundamentally important problem due to recent technological developments in genomics that generate such single-cell gene expression data at a very large scale. In order to utilize this data for learning gene regulatory networks, efficient and reliable causal inference algorithms are needed that can make use of both observational and interventional data. In this paper, we present two algorithms of this type and prove that both are consistent under the faithfulness assumption. These algorithms are interventional adaptations of the Greedy SP algorithm and are the first algorithms using both observational and interventional data with consistency guarantees. Moreover, these algorithms have the advantage that they are nonparametric, which makes them useful also for analyzing non-Gaussian data. In this paper, we present these two algorithms and their consistency guarantees, and we analyze their performance on simulated data, protein signaling data, and single-cell gene expression data.

Efficiently aggregating data from different sources is a challenging problem, particularly when samples from each source are distributed differently. These differences can be inherent to the inference task or present for other reasons: sensors in a sensor network may be placed far apart, affecting their individual measurements. Conversely, it is computationally advantageous to split Bayesian inference tasks across subsets of data, but data need not be identically distributed across subsets. One principled way to fuse probability distributions is via the lens of optimal transport: the Wasserstein barycenter is a single distribution that summarizes a collection of input measures while respecting their geometry. However, computing the barycenter scales poorly and requires discretization of all input distributions and the barycenter itself.

Generalized linear models (GLMs)--such as logistic regression, Poisson regression, and robust regression--provide interpretable models for diverse data types. Probabilistic approaches, particularly Bayesian ones, allow coherent estimates of uncertainty, incorporation of prior information, and sharing of power across experiments via hierarchical models. In practice, however, the approximate Bayesian methods necessary for inference have either failed to scale to large data sets or failed to provide theoretical guarantees on the quality of inference. We propose a new approach based on constructing polynomial approximate sufficient statistics for GLMs (PASS-GLM). We demonstrate that our method admits a simple algorithm as well as trivial streaming and distributed extensions that do not compound error across computations. We provide theoretical guarantees on the quality of point (MAP) estimates, the approximate posterior, and posterior mean and uncertainty estimates. We validate our approach empirically in the case of logistic regression using a quadratic approximation and show competitive performance with stochastic gradient descent, MCMC, and the Laplace approximation in terms of speed and multiple measures of accuracy--including on an advertising data set with 40 million data points and 20,000 covariates.

We present a novel training framework for neural sequence models, particularly for grounded dialog generation. The standard training paradigm for these models is maximum likelihood estimation (MLE), or minimizing the cross-entropy of the human responses. Across a variety of domains, a recurring problem with MLE trained generative neural dialog models (G) is that they tend to produce'safe' and generic responses ('I don't know', 'I can't tell'). In contrast, discriminative dialog models (D) that are trained to rank a list of candidate human responses outperform their generative counterparts; in terms of automatic metrics, diversity, and informativeness of the responses. However, D is not useful in practice since it can not be deployed to have real conversations with users. Our work aims to achieve the best of both worlds - the practical usefulness of G and the strong performance of D - via knowledge transfer from D to G. Our primary contribution is an end-to-end trainable generative visual dialog model, where G receives gradients from D as a perceptual (not adversarial) loss of the sequence sampled from G. We leverage the recently proposed Gumbel-Softmax (GS) approximation to the discrete distribution - specifically, a RNN augmented with a sequence of GS samplers, coupled with the straight-through gradient estimator to enable end-to-end differentiability. We also introduce a stronger encoder for visual dialog, and employ a self-attention mechanism for answer encoding along with a metric learning loss to aid D in better capturing semantic similarities in answer responses. Overall, our proposed model outperforms state-of-the-art on the VisDial dataset by a significant margin (2.67% on recall@10).

Deep neural networks (DNNs) and probabilistic graphical models (PGMs) are the two main tools for statistical modeling. While DNNs provide the ability to model rich and complex relationships between input and output variables, PGMs provide the ability to encode dependencies among the output variables themselves. End-to-end training methods for models with structured graphical dependencies on top of neural predictions have recently emerged as a principled way of combining these two paradigms. While these models have proven to be powerful in discriminative settings with discrete outputs, extensions to structured continuous spaces, as well as performing efficient inference in these spaces, are lacking. We propose non-parametric structured output networks (NSON), a modular approach that cleanly separates a non-parametric, structured posterior representation from a discriminative inference scheme but allows joint end-to-end training of both components. Our experiments evaluate the ability of NSONs to capture structured posterior densities (modeling) and to compute complex statistics of those densities (inference). We compare our model to output spaces of varying expressiveness and popular variational and sampling-based inference algorithms.

Neural Information Processing Systems http://nips.cc/

In this paper, we propose a framework for efficient Source-Free Domain Adaptation (SFDA) in the context of time-series, focusing on enhancing both parameter efficiency and data-sample utilization. Our approach introduces an improved paradigm for source-model preparation and target-side adaptation, aiming to enhance training efficiency during target adaptation. Specifically, we reparameterize the source model's weights in a Tucker-style decomposed manner, factorizing the model into a compact form during the source model preparation phase. During target-side adaptation, only a subset of these decomposed factors is fine-tuned, leading to significant improvements in training efficiency. We demonstrate using PAC Bayesian analysis that this selective fine-tuning strategy implicitly regularizes the adaptation process by constraining the model's learning capacity. Furthermore, this re-parameterization reduces the overall model size and enhances inference efficiency, making the approach particularly well suited for resource-constrained devices. Additionally, we demonstrate that our framework is compatible with various SFDA methods and achieves significant computational efficiency, reducing the number of fine-tuned parameters and inference overhead in terms of MACs by over 90% while maintaining model performance.

A fully Bayesian treatment of complicated predictive models (such as deep neural networks) would enable rigorous uncertainty quantification and the automation of higher-level tasks including model selection. However, the intractability of sampling Bayesian posteriors over many parameters inhibits the use of Bayesian methods where they are most needed. Thermodynamic computing has emerged as a paradigm for accelerating operations used in machine learning, such as matrix inversion, and is based on the mapping of Langevin equations to the dynamics of noisy physical systems. Hence, it is natural to consider the implementation of Langevin sampling algorithms on thermodynamic devices. In this work we propose electronic analog devices that sample from Bayesian posteriors by realizing Langevin dynamics physically. Circuit designs are given for sampling the posterior of a Gaussian-Gaussian model and for Bayesian logistic regression, and are validated by simulations. It is shown, under reasonable assumptions, that the Bayesian posteriors for these models can be sampled in time scaling with $\ln(d)$, where $d$ is dimension. For the Gaussian-Gaussian model, the energy cost is shown to scale with $ d \ln(d)$. These results highlight the potential for fast, energy-efficient Bayesian inference using thermodynamic computing.