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 Bayesian Inference


Revisiting Bayesian Model Averaging in the Era of Foundation Models

arXiv.org Machine Learning

We revisit the classical, full-fledged Bayesian model averaging (BMA) paradigm to ensemble pre-trained and/or lightly-finetuned foundation models to enhance the classification performance on image and text data. To make BMA tractable under foundation models, we introduce trainable linear classifiers that take frozen features from the pre-trained foundation models as inputs. The model posteriors over the linear classifiers tell us which linear heads and frozen features are better suited for a given dataset, resulting in a principled model ensembling method. Furthermore, we propose a computationally cheaper, optimizable model averaging scheme (OMA). In OMA, we directly optimize the model ensemble weights, just like those weights based on model posterior distributions in BMA, by reducing the amount of surprise (expected entropy of the predictions) we get from predictions of ensembled models. With the rapid development of foundation models, these approaches will enable the incorporation of future, possibly significantly better foundation models to enhance the performance of challenging classification tasks.


Identifying Causal Direction via Variational Bayesian Compression

arXiv.org Machine Learning

Telling apart the cause and effect between two random variables with purely observational data is a challenging problem that finds applications in various scientific disciplines. A key principle utilized in this task is the algorithmic Markov condition, which postulates that the joint distribution, when factorized according to the causal direction, yields a more succinct codelength compared to the anti-causal direction. Previous approaches approximate these codelengths by relying on simple functions or Gaussian processes (GPs) with easily evaluable complexity, compromising between model fitness and computational complexity. To overcome these limitations, we propose leveraging the variational Bayesian learning of neural networks as an interpretation of the codelengths. Consequently, we can enhance the model fitness while promoting the succinctness of the codelengths, while avoiding the significant computational complexity of the GP-based approaches. Extensive experiments on both synthetic and real-world benchmarks in cause-effect identification demonstrate the effectiveness of our proposed method, surpassing the overall performance of related complexity-based and structural causal model regression-based approaches.


A Provable Approach for End-to-End Safe Reinforcement Learning

arXiv.org Artificial Intelligence

A longstanding goal in safe reinforcement learning (RL) is a method to ensure the safety of a policy throughout the entire process, from learning to operation. However, existing safe RL paradigms inherently struggle to achieve this objective. We propose a method, called Provably Lifetime Safe RL (PLS), that integrates offline safe RL with safe policy deployment to address this challenge. Our proposed method learns a policy offline using return-conditioned supervised learning and then deploys the resulting policy while cautiously optimizing a limited set of parameters, known as target returns, using Gaussian processes (GPs). Theoretically, we justify the use of GPs by analyzing the mathematical relationship between target and actual returns. We then prove that PLS finds near-optimal target returns while guaranteeing safety with high probability. Empirically, we demonstrate that PLS outperforms baselines both in safety and reward performance, thereby achieving the longstanding goal to obtain high rewards while ensuring the safety of a policy throughout the lifetime from learning to operation.


ItDPDM: Information-Theoretic Discrete Poisson Diffusion Model

arXiv.org Artificial Intelligence

Generative modeling of non-negative, discrete data, such as symbolic music, remains challenging due to two persistent limitations in existing methods. Firstly, many approaches rely on modeling continuous embeddings, which is suboptimal for inherently discrete data distributions. Secondly, most models optimize variational bounds rather than exact data likelihood, resulting in inaccurate likelihood estimates and degraded sampling quality. While recent diffusion-based models have addressed these issues separately, we tackle them jointly. In this work, we introduce the Information-Theoretic Discrete Poisson Diffusion Model (ItDPDM), inspired by photon arrival process, which combines exact likelihood estimation with fully discrete-state modeling. Central to our approach is an information-theoretic Poisson Reconstruction Loss (PRL) that has a provable exact relationship with the true data likelihood. ItDPDM achieves improved likelihood and sampling performance over prior discrete and continuous diffusion models on a variety of synthetic discrete datasets. Furthermore, on real-world datasets such as symbolic music and images, ItDPDM attains superior likelihood estimates and competitive generation quality-demonstrating a proof of concept for distribution-robust discrete generative modeling.


Federated Instrumental Variable Analysis via Federated Generalized Method of Moments

arXiv.org Machine Learning

Instrumental variables (IV) analysis is an important applied tool for areas such as healthcare and consumer economics. For IV analysis in high-dimensional settings, the Generalized Method of Moments (GMM) using deep neural networks offers an efficient approach. With non-i.i.d. data sourced from scattered decentralized clients, federated learning is a popular paradigm for training the models while promising data privacy. However, to our knowledge, no federated algorithm for either GMM or IV analysis exists to date. In this work, we introduce federated instrumental variables analysis (FedIV) via federated generalized method of moments (FedGMM). We formulate FedGMM as a federated zero-sum game defined by a federated non-convex non-concave minimax optimization problem, which is solved using federated gradient descent ascent (FedGDA) algorithm. One key challenge arises in theoretically characterizing the federated local optimality. To address this, we present properties and existence results of clients' local equilibria via FedGDA limit points. Thereby, we show that the federated solution consistently estimates the local moment conditions of every participating client. The proposed algorithm is backed by extensive experiments to demonstrate the efficacy of our approach.


Causal Posterior Estimation

arXiv.org Machine Learning

We present Causal Posterior Estimation (CPE), a novel method for Bayesian inference in simulator models, i.e., models where the evaluation of the likelihood function is intractable or too computationally expensive, but where one can simulate model outputs given parameter values. CPE utilizes a normalizing flow-based (NF) approximation to the posterior distribution which carefully incorporates the conditional dependence structure induced by the graphical representation of the model into the neural network. Thereby it is possible to improve the accuracy of the approximation. We introduce both discrete and continuous NF architectures for CPE and propose a constant-time sampling procedure for the continuous case which reduces the computational complexity of drawing samples to O(1) as for discrete NFs. We show, through an extensive experimental evaluation, that by incorporating the conditional dependencies induced by the graphical model directly into the neural network, rather than learning them from data, CPE is able to conduct highly accurate posterior inference either outperforming or matching the state of the art in the field.


Integral Imprecise Probability Metrics

arXiv.org Machine Learning

Quantifying differences between probability distributions is fundamental to statistics and machine learning, primarily for comparing statistical uncertainty. In contrast, epistemic uncertainty (EU) -- due to incomplete knowledge -- requires richer representations than those offered by classical probability. Imprecise probability (IP) theory offers such models, capturing ambiguity and partial belief. This has driven growing interest in imprecise probabilistic machine learning (IPML), where inference and decision-making rely on broader uncertainty models -- highlighting the need for metrics beyond classical probability. This work introduces the Integral Imprecise Probability Metric (IIPM) framework, a Choquet integral-based generalisation of classical Integral Probability Metric (IPM) to the setting of capacities -- a broad class of IP models encompassing many existing ones, including lower probabilities, probability intervals, belief functions, and more. Theoretically, we establish conditions under which IIPM serves as a valid metric and metrises a form of weak convergence of capacities. Practically, IIPM not only enables comparison across different IP models but also supports the quantification of epistemic uncertainty within a single IP model. In particular, by comparing an IP model with its conjugate, IIPM gives rise to a new class of EU measures -- Maximum Mean Imprecision -- which satisfy key axiomatic properties proposed in the Uncertainty Quantification literature. We validate MMI through selective classification experiments, demonstrating strong empirical performance against established EU measures, and outperforming them when classical methods struggle to scale to a large number of classes. Our work advances both theory and practice in IPML, offering a principled framework for comparing and quantifying epistemic uncertainty under imprecision.


Semi-supervised Clustering Through Representation Learning of Large-scale EHR Data

arXiv.org Artificial Intelligence

Electronic Health Records (EHR) offer rich real-world data for personalized medicine, providing insights into disease progression, treatment responses, and patient outcomes. However, their sparsity, heterogeneity, and high dimensionality make them difficult to model, while the lack of standardized ground truth further complicates predictive modeling. To address these challenges, we propose SCORE, a semi-supervised representation learning framework that captures multi-domain disease profiles through patient embeddings. SCORE employs a Poisson-Adapted Latent factor Mixture (PALM) Model with pre-trained code embeddings to characterize codified features and extract meaningful patient phenotypes and embeddings. To handle the computational challenges of large-scale data, it introduces a hybrid Expectation-Maximization (EM) and Gaussian Variational Approximation (GVA) algorithm, leveraging limited labeled data to refine estimates on a vast pool of unlabeled samples. We theoretically establish the convergence of this hybrid approach, quantify GVA errors, and derive SCORE's error rate under diverging embedding dimensions. Our analysis shows that incorporating unlabeled data enhances accuracy and reduces sensitivity to label scarcity. Extensive simulations confirm SCORE's superior finite-sample performance over existing methods. Finally, we apply SCORE to predict disability status for patients with multiple sclerosis (MS) using partially labeled EHR data, demonstrating that it produces more informative and predictive patient embeddings for multiple MS-related conditions compared to existing approaches.


Joint Magnetometer-IMU Calibration via Maximum A Posteriori Estimation

arXiv.org Artificial Intelligence

This paper presents a new approach for jointly calibrating magnetometers and inertial measurement units, focusing on improving calibration accuracy and computational efficiency. The proposed method formulates the calibration problem as a maximum a posteriori estimation problem, treating both the calibration parameters and orientation trajectory of the sensors as unknowns. This formulation enables efficient optimization with closed-form derivatives. The method is compared against two state-of-the-art approaches in terms of computational complexity and estimation accuracy. Simulation results demonstrate that the proposed method achieves lower root mean square error in calibration parameters while maintaining competitive computational efficiency. Further validation through real-world experiments confirms the practical benefits of our approach: it effectively reduces position drift in a magnetic field-aided inertial navigation system by more than a factor of two on most datasets. Moreover, the proposed method calibrated 30 magnetometers in less than 2 minutes. The contributions include a new calibration method, an analysis of existing methods, and a comprehensive empirical evaluation. Datasets and algorithms are made publicly available to promote reproducible research.


Finite-Sample Maximum Likelihood Estimation of Location

Neural Information Processing Systems

We consider 1-dimensional location estimation, where we estimate a parameter \lambda from n samples \lambda \eta_i, with each \eta_i drawn i.i.d. For fixed f the maximum-likelihood estimate (MLE) is well-known to be optimal in the limit as n \to \infty: it is asymptotically normal with variance matching the Cramer-Rao lower bound of \frac{1}{n\mathcal{I}}, where \mathcal{I} is the Fisher information of f . However, this bound does not hold for finite n, or when f varies with n . We show for arbitrary f and n that one can recover a similar theory based on the Fisher information of a smoothed version of f, where the smoothing radius decays with n .