Bayesian Inference
Joint segmentation of multivariate time series with hidden process regression for human activity recognition
Chamroukhi, Faicel, Mohammed, Samer, Trabelsi, Dorra, Oukhellou, Latifa, Amirat, Yacine
The problem of human activity recognition is central for understanding and predicting the human behavior, in particular in a prospective of assistive services to humans, such as health monitoring, well being, security, etc. There is therefore a growing need to build accurate models which can take into account the variability of the human activities over time (dynamic models) rather than static ones which can have some limitations in such a dynamic context. In this paper, the problem of activity recognition is analyzed through the segmentation of the multidimensional time series of the acceleration data measured in the 3-d space using body-worn accelerometers. The proposed model for automatic temporal segmentation is a specific statistical latent process model which assumes that the observed acceleration sequence is governed by sequence of hidden (unobserved) activities. More specifically, the proposed approach is based on a specific multiple regression model incorporating a hidden discrete logistic process which governs the switching from one activity to another over time. The model is learned in an unsupervised context by maximizing the observed-data log-likelihood via a dedicated expectation-maximization (EM) algorithm. We applied it on a real-world automatic human activity recognition problem and its performance was assessed by performing comparisons with alternative approaches, including well-known supervised static classifiers and the standard hidden Markov model (HMM). The obtained results are very encouraging and show that the proposed approach is quite competitive even it works in an entirely unsupervised way and does not requires a feature extraction preprocessing step.
Outlier robust system identification: a Bayesian kernel-based approach
Bottegal, Giulio, Aravkin, Aleksandr Y., Hjalmarsson, Hakan, Pillonetto, Gianluigi
In this paper, we propose an outlier-robust regularized kernel-based method for linear system identification. The unknown impulse response is modeled as a zero-mean Gaussian process whose covariance (kernel) is given by the recently proposed stable spline kernel, which encodes information on regularity and exponential stability. To build robustness to outliers, we model the measurement noise as realizations of independent Laplacian random variables. The identification problem is cast in a Bayesian framework, and solved by a new Markov Chain Monte Carlo (MCMC) scheme. In particular, exploiting the representation of the Laplacian random variables as scale mixtures of Gaussians, we design a Gibbs sampler which quickly converges to the target distribution. Numerical simulations show a substantial improvement in the accuracy of the estimates over state-of-the-art kernel-based methods.
Non-parametric Bayesian modeling of complex networks
Schmidt, Mikkel N., Mรธrup, Morten
Modeling structure in complex networks using Bayesian non-parametrics makes it possible to specify flexible model structures and infer the adequate model complexity from the observed data. This paper provides a gentle introduction to non-parametric Bayesian modeling of complex networks: Using an infinite mixture model as running example we go through the steps of deriving the model as an infinite limit of a finite parametric model, inferring the model parameters by Markov chain Monte Carlo, and checking the model's fit and predictive performance. We explain how advanced non-parametric models for complex networks can be derived and point out relevant literature.
Detecting Parameter Symmetries in Probabilistic Models
Nishihara, Robert, Minka, Thomas, Tarlow, Daniel
Probabilistic models play a central role in modern machine learning. They offer a powerful framework for learning from data, and they have found applications in a variety of scientific fields beyond machine learning. A longstanding goal in machine learning and statistics is to achieve a separation between modeling and inference, so that users of these tools may focus on specifying models without having to implement new inference algorithms every time the models change. Recently, work in probabilistic programming has taken up this challenge, seeking to unify probabilistic modeling with computer programming in order to dramatically increase the effectiveness of machine learning experts (DARPA, 2013) and to equip non-experts with effective tools for specifying models and performing inference. We anticipate that continued success toward these goals will decrease the reliance of machine learning practitioners on tried-and-true models and will shift the community toward a paradigm grounded in flexible tools for rapidly prototyping and designing new models (Bishop, 2013).
Efficient Bayes-Adaptive Reinforcement Learning using Sample-Based Search
Guez, Arthur, Silver, David, Dayan, Peter
Bayesian model-based reinforcement learning is a formally elegant approach to learning optimal behaviour under model uncertainty, trading off exploration and exploitation in an ideal way. Unfortunately, finding the resulting Bayes-optimal policies is notoriously taxing, since the search space becomes enormous. In this paper we introduce a tractable, sample-based method for approximate Bayes-optimal planning which exploits Monte-Carlo tree search. Our approach outperformed prior Bayesian model-based RL algorithms by a significant margin on several well-known benchmark problems -- because it avoids expensive applications of Bayes rule within the search tree by lazily sampling models from the current beliefs. We illustrate the advantages of our approach by showing it working in an infinite state space domain which is qualitatively out of reach of almost all previous work in Bayesian exploration.
Identification of Gaussian Process State-Space Models with Particle Stochastic Approximation EM
Frigola, Roger, Lindsten, Fredrik, Schรถn, Thomas B., Rasmussen, Carl E.
Dept. of Information Technology, Uppsala University, Sweden.Abstract: Gaussian process state-space models (GP-SSMs) are a very flexible family of models of nonlinear dynamical systems. They comprise a Bayesian nonparametric representation of the dynamics of the system and additional (hyper-)parameters governing the properties of this nonparametric representation. The Bayesian formalism enables systematic reasoning about the uncertainty in the system dynamics. We present an approach to maximum likelihood identification of the parameters in GP-SSMs, while retaining the full nonparametric description of the dynamics. The method is based on a stochastic approximation version of the EM algorithm that employs recent developments in particle Markov chain Monte Carlo for efficient identification. INTRODUCTION Inspired by recent developments in robotics and machine learning, we aim at constructing models of nonlinear dynamical systems capable of quantifying the uncertainty in their predictions.
Bayesian Inference and Learning in Gaussian Process State-Space Models with Particle MCMC
Frigola, Roger, Lindsten, Fredrik, Schรถn, Thomas B., Rasmussen, Carl E.
State-space models are successfully used in many areas of science, engineering and economics to model time series and dynamical systems. We present a fully Bayesian approach to inference \emph{and learning} (i.e. state estimation and system identification) in nonlinear nonparametric state-space models. We place a Gaussian process prior over the state transition dynamics, resulting in a flexible model able to capture complex dynamical phenomena. To enable efficient inference, we marginalize over the transition dynamics function and infer directly the joint smoothing distribution using specially tailored Particle Markov Chain Monte Carlo samplers. Once a sample from the smoothing distribution is computed, the state transition predictive distribution can be formulated analytically. Our approach preserves the full nonparametric expressivity of the model and can make use of sparse Gaussian processes to greatly reduce computational complexity.
Comparative Analysis of Viterbi Training and Maximum Likelihood Estimation for HMMs
Allahverdyan, Armen E., Galstyan, Aram
We present an asymptotic analysis of Viterbi Training (VT) and contrast it with a more conventional Maximum Likelihood (ML) approach to parameter estimation in Hidden Markov Models. While ML estimator works by (locally) maximizing the likelihood of the observed data, VT seeks to maximize the probability of the most likely hidden state sequence. We develop an analytical framework based on a generating function formalism and illustrate it on an exactly solvable model of HMM with one unambiguous symbol. For this particular model the ML objective function is continuously degenerate. VT objective, in contrast, is shown to have only finite degeneracy. Furthermore, VT converges faster and results in sparser (simpler) models, thus realizing an automatic Occam's razor for HMM learning. For more general scenario VT can be worse compared to ML but still capable of correctly recovering most of the parameters.
Bayesian Structural Inference for Hidden Processes
Strelioff, Christopher C., Crutchfield, James P.
We introduce a Bayesian approach to discovering patterns in structurally complex processes. The proposed method of Bayesian Structural Inference (BSI) relies on a set of candidate unifilar HMM (uHMM) topologies for inference of process structure from a data series. We employ a recently developed exact enumeration of topological epsilon-machines. (A sequel then removes the topological restriction.) This subset of the uHMM topologies has the added benefit that inferred models are guaranteed to be epsilon-machines, irrespective of estimated transition probabilities. Properties of epsilon-machines and uHMMs allow for the derivation of analytic expressions for estimating transition probabilities, inferring start states, and comparing the posterior probability of candidate model topologies, despite process internal structure being only indirectly present in data. We demonstrate BSI's effectiveness in estimating a process's randomness, as reflected by the Shannon entropy rate, and its structure, as quantified by the statistical complexity. We also compare using the posterior distribution over candidate models and the single, maximum a posteriori model for point estimation and show that the former more accurately reflects uncertainty in estimated values. We apply BSI to in-class examples of finite- and infinite-order Markov processes, as well to an out-of-class, infinite-state hidden process.
Sequential Monte Carlo Inference of Mixed Membership Stochastic Blockmodels for Dynamic Social Networks
Kobayashi, Tomoki, Eguchi, Koji
Many kinds of data can be represented as a network or graph. It is crucial to infer the latent structure underlying such a network and to predict unobserved links in the network. Mixed Membership Stochastic Blockmodel (MMSB) is a promising model for network data. Latent variables and unknown parameters in MMSB have been estimated through Bayesian inference with the entire network; however, it is important to estimate them online for evolving networks. In this paper, we first develop online inference methods for MMSB through sequential Monte Carlo methods, also known as particle filters. We then extend them for time-evolving networks, taking into account the temporal dependency of the network structure. We demonstrate through experiments that the time-dependent particle filter outperformed several baselines in terms of prediction performance in an online condition.