Bayesian Inference
Poisson intensity estimation with reproducing kernels
Flaxman, Seth, Teh, Yee Whye, Sejdinovic, Dino
Despite the fundamental nature of the inhomogeneous Poisson process in the theory and application of stochastic processes, and its attractive generalizations (e.g. Cox process), few tractable nonparametric modeling approaches of intensity functions exist, especially when observed points lie in a high-dimensional space. In this paper we develop a new, computationally tractable Reproducing Kernel Hilbert Space (RKHS) formulation for the inhomogeneous Poisson process. We model the square root of the intensity as an RKHS function. Whereas RKHS models used in supervised learning rely on the so-called representer theorem, the form of the inhomogeneous Poisson process likelihood means that the representer theorem does not apply. However, we prove that the representer theorem does hold in an appropriately transformed RKHS, guaranteeing that the optimization of the penalized likelihood can be cast as a tractable finite-dimensional problem. The resulting approach is simple to implement, and readily scales to high dimensions and large-scale datasets.
Tensor-on-tensor regression
We propose a framework for the linear prediction of a multi-way array (i.e., a tensor) from another multi-way array of arbitrary dimension, using the contracted tensor product. This framework generalizes several existing approaches, including methods to predict a scalar outcome from a tensor, a matrix from a matrix, or a tensor from a scalar. We describe an approach that exploits the multiway structure of both the predictors and the outcomes by restricting the coefficients to have reduced CP-rank. We propose a general and efficient algorithm for penalized least-squares estimation, which allows for a ridge (L_2) penalty on the coefficients. The objective is shown to give the mode of a Bayesian posterior, which motivates a Gibbs sampling algorithm for inference. We illustrate the approach with an application to facial image data. An R package is available at https://github.com/lockEF/MultiwayRegression .
Inference of High-dimensional Autoregressive Generalized Linear Models
Hall, Eric C., Raskutti, Garvesh, Willett, Rebecca
Vector autoregressive models characterize a variety of time series in which linear combinations of current and past observations can be used to accurately predict future observations. For instance, each element of an observation vector could correspond to a different node in a network, and the parameters of an autoregressive model would correspond to the impact of the network structure on the time series evolution. Often these models are used successfully in practice to learn the structure of social, epidemiological, financial, or biological neural networks. However, little is known about statistical guarantees on estimates of such models in non-Gaussian settings. This paper addresses the inference of the autoregressive parameters and associated network structure within a generalized linear model framework that includes Poisson and Bernoulli autoregressive processes. At the heart of this analysis is a sparsity-regularized maximum likelihood estimator. While sparsity-regularization is well-studied in the statistics and machine learning communities, those analysis methods cannot be applied to autoregressive generalized linear models because of the correlations and potential heteroscedasticity inherent in the observations. Sample complexity bounds are derived using a combination of martingale concentration inequalities and modern empirical process techniques for dependent random variables. These bounds, which are supported by several simulation studies, characterize the impact of various network parameters on estimator performance.
Numbers war: How Bayesian vs frequentist statistics influence AI
If you want to develop your ML and AI skills, you will need to pick up some statistics and before you have got more than a few steps down that path you will find (whether you like it or not) that you have entered the Twilight Zone that is the frequentist/Bayesian religious war. I use the term "war" advisedly because war, by definition, has moved beyond debate and discussion. "Religious" because the war is based on belief systems, not information. The frequentist world has been briefly described here. The Bayesian world is described in what follows.
Polya Urn Latent Dirichlet Allocation: a doubly sparse massively parallel sampler
Terenin, Alexander, Magnusson, Måns, Jonsson, Leif, Draper, David
Latent Dirichlet Allocation (LDA) is a topic model widely used in natural language processing and machine learning. Most approaches to training the model rely on iterative algorithms, which makes it difficult to run LDA on big data sets that are best analyzed in parallel and distributed computational environments. Indeed, current approaches to parallel inference either don't converge to the correct posterior or require storage of large dense matrices in memory. We present a novel sampler that overcomes both problems, and we show that this sampler is faster, both empirically and theoretically, than previous Gibbs samplers for LDA. We do so by employing a novel Pólya-Urn-based approximation in the sparse partially collapsed sampler for LDA. We prove that the approximation error vanishes with data size, making our algorithm asymptotically exact, a property of importance for large-scale topic models. In addition, we show, via an explicit example, that - contrary to popular belief in the topic modeling literature - partially collapsed samplers can be more efficient than fully collapsed samplers. We conclude by comparing the performance of our algorithm with that of other approaches on well-known corpora. Keywords: Bayesian inference, Big Data, computational complexity, Gibbs sampling, Latent Dirichlet Allocation, Markov Chain Monte Carlo, natural language processing, parallel and distributed systems, topic models.
Learning Discrete Bayesian Networks from Continuous Data
Chen, Yi-Chun, Wheeler, Tim A., Kochenderfer, Mykel J.
Learning Bayesian networks from raw data can help provide insights into the relationships between variables. While real data often contains a mixture of discrete and continuous-valued variables, many Bayesian network structure learning algorithms assume all random variables are discrete. Thus, continuous variables are often discretized when learning a Bayesian network. However, the choice of discretization policy has significant impact on the accuracy, speed, and interpretability of the resulting models. This paper introduces a principled Bayesian discretization method for continuous variables in Bayesian networks with quadratic complexity instead of the cubic complexity of other standard techniques. Empirical demonstrations show that the proposed method is superior to the established minimum description length algorithm. In addition, this paper shows how to incorporate existing methods into the structure learning process to discretize all continuous variables and simultaneously learn Bayesian network structures.
Continuum Limit of Posteriors in Graph Bayesian Inverse Problems
Trillos, Nicolas Garcia, Sanz-Alonso, Daniel
We consider the problem of recovering a function input of a differential equation formulated on an unknown domain $M$. We assume to have access to a discrete domain $M_n=\{x_1, \dots, x_n\} \subset M$, and to noisy measurements of the output solution at $p\le n$ of those points. We introduce a graph-based Bayesian inverse problem, and show that the graph-posterior measures over functions in $M_n$ converge, in the large $n$ limit, to a posterior over functions in $M$ that solves a Bayesian inverse problem with known domain. The proofs rely on the variational formulation of the Bayesian update, and on a new topology for the study of convergence of measures over functions on point clouds to a measure over functions on the continuum. Our framework, techniques, and results may serve to lay the foundations of robust uncertainty quantification of graph-based tasks in machine learning. The ideas are presented in the concrete setting of recovering the initial condition of the heat equation on an unknown manifold.
Horseshoe Regularization for Feature Subset Selection
Bhadra, Anindya, Datta, Jyotishka, Polson, Nicholas G., Willard, Brandon
Feature subset selection arises in many high-dimensional applications of statistics, such as compressed sensing and genomics. The $\ell_0$ penalty is ideal for this task, the caveat being it requires the NP-hard combinatorial evaluation of all models. A recent area of considerable interest is to develop efficient algorithms to fit models with a non-convex $\ell_\gamma$ penalty for $\gamma\in (0,1)$, which results in sparser models than the convex $\ell_1$ or lasso penalty, but is harder to fit. We propose an alternative, termed the horseshoe regularization penalty for feature subset selection, and demonstrate its theoretical and computational advantages. The distinguishing feature from existing non-convex optimization approaches is a full probabilistic representation of the penalty as the negative of the logarithm of a suitable prior, which in turn enables efficient expectation-maximization and local linear approximation algorithms for optimization and MCMC for uncertainty quantification. In synthetic and real data, the resulting algorithms provide better statistical performance, and the computation requires a fraction of time of state-of-the-art non-convex solvers.
Bayesian Statistics Explained in Simple English For Beginners
Bayesian Statistics continues to remain incomprehensible in the ignited minds of many analysts. Being amazed by the incredible power of machine learning, a lot of us have become unfaithful to statistics. Our focus has narrowed down to exploring machine learning. We fail to understand that machine learning is only one way to solve real world problems. In several situations, it does not help us solve business problems, even though there is data involved in these problems. To say the least, knowledge of statistics will allow you to work on complex analytical problems, irrespective of the size of data. In 1770s, Thomas Bayes introduced'Bayes Theorem'.
A new kernel-based approach to system identification with quantized output data
Bottegal, Giulio, Hjalmarsson, Håkan, Pillonetto, Gianluigi
In this paper we introduce a novel method for linear system identification with quantized output data. We model the impulse response as a zero-mean Gaussian process whose covariance (kernel) is given by the recently proposed stable spline kernel, which encodes information on regularity and exponential stability. This serves as a starting point to cast our system identification problem into a Bayesian framework. We employ Markov Chain Monte Carlo methods to provide an estimate of the system. In particular, we design two methods based on the so-called Gibbs sampler that allow also to estimate the kernel hyperparameters by marginal likelihood maximization via the expectation-maximization method. Numerical simulations show the effectiveness of the proposed scheme, as compared to the state-of-the-art kernel-based methods when these are employed in system identification with quantized data.