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 Bayesian Inference


Bayesian Inference for Large Scale Image Classification

arXiv.org Machine Learning

Bayesian inference promises to ground and improve the performance of deep neural networks. It promises to be robust to overfitting, to simplify the training procedure and the space of hyperparameters, and to provide a calibrated measure of uncertainty that can enhance decision making, agent exploration and prediction fairness. Markov Chain Monte Carlo (MCMC) methods enable Bayesian inference by generating samples from the posterior distribution over model parameters. Despite the theoretical advantages of Bayesian inference and the similarity between MCMC and optimization methods, the performance of sampling methods has so far lagged behind optimization methods for large scale deep learning tasks. We aim to fill this gap and introduce ATMC, an adaptive noise MCMC algorithm that estimates and is able to sample from the posterior of a neural network. ATMC dynamically adjusts the amount of momentum and noise applied to each parameter update in order to compensate for the use of stochastic gradients. We use a ResNet architecture without batch normalization to test ATMC on the Cifar10 benchmark and the large scale ImageNet benchmark and show that, despite the absence of batch normalization, ATMC outperforms a strong optimization baseline in terms of both classification accuracy and test log-likelihood. We show that ATMC is intrinsically robust to overfitting on the training data and that ATMC provides a better calibrated measure of uncertainty compared to the optimization baseline.


Variational Bayes on Manifolds

arXiv.org Machine Learning

Variational Bayes (VB) has become a versatile tool for Bayesian inference in statistics. Nonetheless, the development of the existing VB algorithms is so far generally restricted to the case where the variational parameter space is Euclidean, which hinders the potential broad application of VB methods. This paper extends the scope of VB to the case where the variational parameter space is a Riemannian manifold. We develop, for the first time in the literature, an efficient manifold-based VB algorithm that exploits both the geometric structure of the constraint parameter space and the information geometry of the manifold of VB approximating probability distributions. Our algorithm is provably convergent and achieves a convergence rate of order $\mathcal O(1/\sqrt{T})$ and $\mathcal O(1/T^{2-2\epsilon})$ for a non-convex evidence lower bound function and a strongly retraction-convex evidence lower bound function, respectively. We develop in particular two manifold VB algorithms, Manifold Gaussian VB and Manifold Neural Net VB, and demonstrate through numerical experiments that the proposed algorithms are stable, less sensitive to initialization and compares favourably to existing VB methods.


Average-Case Lower Bounds for Learning Sparse Mixtures, Robust Estimation and Semirandom Adversaries

arXiv.org Machine Learning

This paper develops several average-case reduction techniques to show new hardness results for three central high-dimensional statistics problems, implying a statistical-computational gap induced by robustness, a detection-recovery gap and a universality principle for these gaps. A main feature of our approach is to map to these problems via a common intermediate problem that we introduce, which we call Imbalanced Sparse Gaussian Mixtures. We assume the planted clique conjecture for a version of the planted clique problem where the position of the planted clique is mildly constrained, and from this obtain the following computational lower bounds: (1) a $k$-to-$k^2$ statistical-computational gap for robust sparse mean estimation, providing the first average-case evidence for a conjecture of Li (2017) and Balakrishnan et al. (2017); (2) a tight lower bound for semirandom planted dense subgraph, which shows that a semirandom adversary shifts the detection threshold in planted dense subgraph to the conjectured recovery threshold; and (3) a universality principle for $k$-to-$k^2$ gaps in a broad class of sparse mixture problems that includes many natural formulations such as the spiked covariance model. Our main approach is to introduce several average-case techniques to produce structured and Gaussianized versions of an input graph problem, and then to rotate these high-dimensional Gaussians by matrices carefully constructed from hyperplanes in $\mathbb{F}_r^t$. For our universality result, we introduce a new method to perform an algorithmic change of measure tailored to sparse mixtures. We also provide evidence that the mild promise in our variant of planted clique does not change the complexity of the problem.


Agglomerative Fast Super-Paramagnetic Clustering

arXiv.org Machine Learning

Concretely, that the proposed algorithm does in fact recover the correct super-paramagnetic cluster configurations that are near the entropy maxima. Previous cases studies include data clustering of stocks [15] and gene data in [4], temporal states of financial markets [8], and state-detection for adaptive machine learning in trading [5]. There is an endless variety of potential use-cases for this type of fast big-data clustering technology. Building on prior work we propose and demonstrate an alternative to fast Super-Paramagnetic Clustering (f-SPC) [15] using a modern and streamlined implementation of the "Merging Algorithm" first suggested by Gi-ada [4], one that can recover the same cluster configurations for a variety of test-cases, but with significantly reduced compute times. We again use the Noh Ansatz [11] and the Maximum Likelihood Estimation approach introduced by Giada and Marsili [4]. We call the new algorithm Agglomerative Super-Paramagnetic Clustering (ASPC) and it has the benefit of being less computationally expensive than the PGAs implemented in [5, 6, 15].


Mini-batch Metropolis-Hastings MCMC with Reversible SGLD Proposal

arXiv.org Machine Learning

Traditional MCMC algorithms are computationally intensive and do not scale well to large data. In particular, the Metropolis-Hastings (MH) algorithm requires passing over the entire dataset to evaluate the likelihood ratio in each iteration. We propose a general framework for performing MH-MCMC using mini-batches of the whole dataset and show that this gives rise to approximately a tempered stationary distribution. We prove that the algorithm preserves the modes of the original target distribution and derive an error bound on the approximation with mild assumptions on the likelihood. To further extend the utility of the algorithm to high dimensional settings, we construct a proposal with forward and reverse moves using stochastic gradient and show that the construction leads to reasonable acceptance probabilities. We demonstrate the performance of our algorithm in both low dimensional models and high dimensional neural network applications. Particularly in the latter case, compared to popular optimization methods, our method is more robust to the choice of learning rate and improves testing accuracy.


Strengthening the Case for a Bayesian Approach to Car-following Model Calibration and Validation using Probabilistic Programming

arXiv.org Machine Learning

-- Compute and memory constraints have historically prevented traffic simulation software users from fully utilizing the predictive models underlying them. When calibrating car-following models, particularly, accommodations have included 1) using sensitivity analysis to limit the number of parameters to be calibrated, and 2) identifying only one set of parameter values using data collected from multiple car-following instances across multiple drivers. Shortcuts are further motivated by insufficient data set sizes, for which a driver may have too few instances to fully account for the variation in their driving behavior . In this paper, we demonstrate that recent technological advances can enable transportation researchers and engineers to overcome these constraints and produce calibration results that 1) outperform industry standard approaches, and 2) allow for a unique set of parameters to be estimated for each driver in a data set, even given a small amount of data. We propose a novel calibration procedure for car-following models based on Bayesian machine learning and probabilistic programming, and apply it to real-world data from a naturalistic driving study. We also discuss how this combination of mathematical and software tools can offer additional benefits such as more informative model validation and the incorporation of true-to-data uncertainty into simulation traces. Traffic simulation software packages are widely used in transportation engineering to estimate the impacts of potential changes to a roadway network and forecast system performance under future scenarios. These packages are underpinned by math-and physics-based models, which are designed to describe behavior at an aggregate (macroscopic) level or at the level of individual drivers (microscopic).


Bayesian Network Based Label Correlation Analysis For Multi-label Classifier Chain

arXiv.org Machine Learning

Bayesian Network Based Label Correlation Analysis For Multi-label Classifier Chain Ran Wang 1,2, Suhe Ye 1,2, Ke Li 3 and Sam Kwong 4 1 College of Mathematics and Statistics, Shenzhen University, Shenzhen 518060, China. 2 Shenzhen Key Laboratory of Advanced Machine Learning and Applications, Shenzhen University, Shenzhen 518060, China. Abstract: Classifier chain (CC) is a multi-label learning approach that constructs a sequence of binary classifiers according to a label order. Each classifier in the sequence is responsible for predicting the relevance of one label. When training the classifier for a label, proceeding labels will be taken as extended features. If the extended features are highly correlated to the label, the performance will be improved, otherwise, the performance will not be influenced or even degraded. How to discover label correlation and determine the label order is critical for CC approach. This paper employs Bayesian network (BN) to model the label correlations and proposes a new BN-based CC method (BNCC). First, conditional entropy is used to describe the dependency relations among labels. Then, a BN is built up by taking nodes as labels and weights of edges as their dependency relations. A new scoring function is proposed to evaluate a BN structure, and a heuristic algorithm is introduced to optimize the BN. At last, by applying topological sorting on the nodes of the optimized BN, the label order for constructing CC model is derived. Experimental comparisons demonstrate the feasibility and effectiveness of the proposed method.


Bayesian Incremental Inference Update by Re-using Calculations from Belief Space Planning: A New Paradigm

arXiv.org Artificial Intelligence

Inference and decision making under uncertainty are key processes in every autonomous system and numerous robotic problems. In recent years, the similarities between inference and decision making triggered much work, from developing unified computational frameworks to pondering about the duality between the two. In spite of these efforts, inference and control, as well as inference and belief space planning (BSP) are still treated as two separate processes. In this paper we propose a paradigm shift, a novel approach which deviates from conventional Bayesian inference and utilizes the similarities between inference and BSP. We make the key observation that inference can be efficiently updated using predictions made during the decision making stage, even in light of inconsistent data association between the two. We developed a two staged process that implements our novel approach and updates inference using calculations from the precursory planning phase. Using autonomous navigation in an unknown environment along with iSAM2 efficient methodologies as a test case, we benchmarked our novel approach against standard Bayesian inference, both with synthetic and real-world data (KITTI dataset). Results indicate that not only our approach improves running time by at least a factor of two while providing the same estimation accuracy, but it also alleviates the computational burden of state dimensionality and loop closures.


Dueling Posterior Sampling for Preference-Based Reinforcement Learning

arXiv.org Artificial Intelligence

In preference-based reinforcement learning (RL), an agent interacts with the environment while receiving preferences instead of absolute feedback. While there is increasing research activity in preference-based RL, the design of formal frameworks that admit tractable theoretical analysis remains an open challenge. Building upon ideas from preference-based bandit learning and posterior sampling in RL, we present Dueling Posterior Sampling (DPS), which employs preference-based posterior sampling to learn both the system dynamics and the underlying utility function that governs the user's preferences. Because preference feedback is provided on trajectories rather than individual state/action pairs, we develop a Bayesian approach to solving the credit assignment problem, translating user preferences to a posterior distribution over state/action reward models. We prove an asymptotic no-regret rate for DPS with a Bayesian logistic regression credit assignment model; to our knowledge, this is the first regret guarantee for preference-based RL. We also discuss possible avenues for extending this proof methodology to analyze other credit assignment models. Finally, we evaluate the approach empirically, showing competitive performance against existing baselines.


The Flawed Reasoning Behind the Replication Crisis - Issue 74: Networks

Nautilus

Suppose we scan 1 million similar women, and we tell everyone who tests positive that they have cancer. Then we will have correctly told all 10,000 women with cancer that they have it. Of the remaining 990,000 women whose lumps were benign, we will incorrectly tell 49,500 women that they have cancer. Therefore, of the women we identify as having cancer, about 83 percent will have been incorrectly diagnosed. Imagine you or a loved one received a positive test result.