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 Optimization


Augmentative Message Passing for Traveling Salesman Problem and Graph Partitioning

Neural Information Processing Systems

The cutting plane method is an augmentative constrained optimization procedure that is often used with continuous-domain optimization techniques such as linear and convex programs. We investigate the viability of a similar idea within message passing -- for integral solutions -- in the context of two combinatorial problems: 1) For Traveling Salesman Problem (TSP), we propose a factor-graph based on Held-Karp formulation, with an exponential number of constraint factors, each of which has an exponential but sparse tabular form.


Difference of Convex Functions Programming for Reinforcement Learning

Neural Information Processing Systems

Large Markov Decision Processes (MDPs) are usually solved using Approximate Dynamic Programming (ADP) methods such as Approximate Value Iteration (AVI) or Approximate Policy Iteration (API). The main contribution of this paper is to show that, alternatively, the optimal state-action value function can be estimated using Difference of Convex functions (DC) Programming. To do so, we study the minimization of a norm of the Optimal Bellman Residual (OBR) $T^*Q-Q$, where $T^*$ is the so-called optimal Bellman operator. Controlling this residual allows controlling the distance to the optimal action-value function, and we show that minimizing an empirical norm of the OBR is consistant in the Vapnik sense.


Learning convolution filters for inverse covariance estimation of neural network connectivity

Neural Information Processing Systems

We consider the problem of inferring direct neural network connections from Calcium imaging time series. Inverse covariance estimation has proven to be a fast and accurate method for learning macro-and micro-scale network connectivity in the brain and in a recent Kaggle Connectomics competition inverse covariance was the main component of several top ten solutions, including our own and the winning team's algorithm. However, the accuracy of inverse covariance estimation is highly sensitive to signal preprocessing of the Calcium fluorescence time series. Furthermore, brute force optimization methods such as grid search and coordinate ascent over signal processing parameters is a time intensive process, where learning may take several days and parameters that optimize one network may not generalize to networks with different size and parameters. In this paper we show how inverse covariance estimation can be dramatically improved using a simple convolution filter prior to applying sample covariance. Furthermore, these signal processing parameters can be learned quickly using a supervised optimization algorithm. In particular, we maximize a binomial log-likelihood loss function with respect to a convolution filter of the time series and the inverse covariance regularization parameter. Our proposed algorithm is relatively fast on networks the size of those in the competition (1000 neurons), producing AUC scores with similar accuracy to the winning solution in training time under 2 hours on a cpu. Prediction on new networks of the same size is carried out in less than 15 minutes, the time it takes to read in the data and write out the solution.


Biclustering Using Message Passing

Neural Information Processing Systems

Biclustering is the analog of clustering on a bipartite graph. Existent methods infer biclusters through local search strategies that find one cluster at a time; a common technique is to update the row memberships based on the current column memberships, and vice versa. We propose a biclustering algorithm that maximizes a global objective function using message passing. Our objective function closely approximates a general likelihood function, separating a cluster size penalty term into row-and column-count penalties. Because we use a global optimization framework, our approach excels at resolving the overlaps between biclusters, which are important features of biclusters in practice. Moreover, Expectation-Maximization can be used to learn the model parameters if they are unknown. In simulations, we find that our method outperforms two of the best existing biclustering algorithms, ISA and LAS, when the planted clusters overlap. Applied to three gene expression datasets, our method finds coregulated gene clusters that have high quality in terms of cluster size and density.


Preference-Based Dynamic Ranking Structure Recognition

arXiv.org Machine Learning

Preference-based data often appear complex and noisy but may conceal underlying homogeneous structures. This paper introduces a novel framework of ranking structure recognition for preference-based data. We first develop an approach to identify dynamic ranking groups by incorporating temporal penalties into a spectral estimation for the celebrated Bradley-Terry model. To detect structural changes, we introduce an innovative objective function and present a practicable algorithm based on dynamic programming. Theoretically, we establish the consistency of ranking group recognition by exploiting properties of a random `design matrix' induced by a reversible Markov chain. We also tailor a group inverse technique to quantify the uncertainty in item ability estimates. Additionally, we prove the consistency of structure change recognition, ensuring the robustness of the proposed framework. Experiments on both synthetic and real-world datasets demonstrate the practical utility and interpretability of our approach.


Singleton-Optimized Conformal Prediction

arXiv.org Machine Learning

Conformal prediction can be used to construct prediction sets that cover the true outcome with a desired probability, but can sometimes lead to large prediction sets that are costly in practice. The most useful outcome is a singleton prediction-an unambiguous decision-yet existing efficiency-oriented methods primarily optimize average set size. Motivated by this, we propose a new nonconformity score that aims to minimize the probability of producing non-singleton sets. Starting from a non-convex constrained optimization problem as a motivation, we provide a geometric reformulation and associated algorithm for computing the nonconformity score and associated split conformal prediction sets in O(K) time for K-class problems. Using this score in split conformal prediction leads to our proposed Singleton-Optimized Conformal Prediction (SOCOP) method. We evaluate our method in experiments on image classification and LLM multiple-choice question-answering, comparing with standard nonconformity scores such as the (negative) label probability estimates and their cumulative distribution function; both of which are motivated by optimizing length. The results show that SOCOP increases singleton frequency (sometimes by over 20%) compared to the above scores, with minimal impact on average set size.


Conditional Risk Minimization with Side Information: A Tractable, Universal Optimal Transport Framework

arXiv.org Machine Learning

Conditional risk minimization arises in high-stakes decisions where risk must be assessed in light of side information, such as stressed economic conditions, specific customer profiles, or other contextual covariates. Constructing reliable conditional distributions from limited data is notoriously difficult, motivating a series of optimal-transport-based proposals that address this uncertainty in a distributionally robust manner. Yet these approaches remain fragmented, each constrained by its own limitations: some rely on point estimates or restrictive structural assumptions, others apply only to narrow classes of risk measures, and their structural connections are unclear. We introduce a universal framework for distributionally robust conditional risk minimization, built on a novel union-ball formulation in optimal transport. This framework offers three key advantages: interpretability, by subsuming existing methods as special cases and revealing their deep structural links; tractability, by yielding convex reformulations for virtually all major risk functionals studied in the literature; and scalability, by supporting cutting-plane algorithms for large-scale conditional risk problems. Applications to portfolio optimization with rank-dependent expected utility highlight the practical effectiveness of the framework, with conditional models converging to optimal solutions where unconditional ones clearly do not.


Bundle Network: a Machine Learning-Based Bundle Method

arXiv.org Artificial Intelligence

This paper presents Bundle Network, a learning-based algorithm inspired by the Bundle Method for convex non-smooth minimization problems. Unlike classical approaches that rely on heuristic tuning of a regularization parameter, our method automatically learns to adjust it from data. Furthermore, we replace the iterative resolution of the optimization problem that provides the search direction-traditionally computed as a convex combination of gradients at visited points-with a recurrent neural model equipped with an attention mechanism. By leveraging the unrolled graph of computation, our Bundle Network can be trained end-to-end via automatic differentiation. Experiments on Lagrangian dual relaxations of the Multi-Commodity Network Design and Generalized Assignment problems demonstrate that our approach consistently outperforms traditional methods relying on grid search for parameter tuning, while generalizing effectively across datasets.


UniAPL: A Unified Adversarial Preference Learning Framework for Instruct-Following

arXiv.org Artificial Intelligence

Shaping powerful LLMs to be beneficial and safe is central to AI alignment. We argue that post-training alignment is fundamentally a unified Preference Learning problem, involving two modalities: demonstrated preferences (e.g., Supervised Fine-Tuning, SFT) and comparative preferences (e.g., Reinforcement Learning, RL).The standard sequential pipeline-SFT followed by RL-is flawed due to a critical distributional mismatch: SFT uses static expert data, but as the policy evolves, its generation distribution drifts, making SFT knowledge brittle. Subsequent RL then explores without direct access to the rich, ground-truth knowledge in expert demonstrations, leading to inefficient, ungrounded updates. This separation prevents mutual regularization between data sources. To address this, we reframe alignment as a constrained optimization problem and propose Unified Adversarial Preference Learning (UniAPL),a novel framework that dynamically aligns the policy's distribution with the expert's. UniAPL implements a single-stage unified training objective, jointly learning from mixed batches of SFT and preference data. In every gradient step, dense expert demonstrations directly ground and regularize online exploration, inherently resolving distributional mismatch and maximizing data synergy.We evaluate UniAPL on instruction-following tasks using Qwen3-235B-Instruct-2507 as the teacher. Our models match or exceed strong GRPO baselines: +5.77% on Qwen3-0.6B (matching a 32B model) and +3.75% on Qwen3-4B,even outperforming the teacher. Analyses of response length and log-probability distributions confirm that UniAPL outputs closely mimic expert demonstrations, achieving both stronger performance and better behavioral alignment.


Light-SQ: Structure-aware Shape Abstraction with Superquadrics for Generated Meshes

arXiv.org Artificial Intelligence

In user-generated-content (UGC) applications, non-expert users often rely on image-to-3D generative models to create 3D assets. In this context, primitive-based shape abstraction offers a promising solution for UGC scenarios by compressing high-resolution meshes into compact, editable representations. Towards this end, effective shape abstraction must therefore be structure-aware, characterized by low overlap between primitives, part-aware alignment, and primitive compactness. We present Light-SQ, a novel superquadric-based optimization framework that explicitly emphasizes structure-awareness from three aspects. (a) We introduce SDF carving to iteratively udpate the target signed distance field, discouraging overlap between primitives. (b) We propose a block-regrow-fill strategy guided by structure-aware volumetric decomposition, enabling structural partitioning to drive primitive placement. (c) We implement adaptive residual pruning based on SDF update history to surpress over-segmentation and ensure compact results. In addition, Light-SQ supports multiscale fitting, enabling localized refinement to preserve fine geometric details. To evaluate our method, we introduce 3DGen-Prim, a benchmark extending 3DGen-Bench with new metrics for both reconstruction quality and primitive-level editability. Extensive experiments demonstrate that Light-SQ enables efficient, high-fidelity, and editable shape abstraction with superquadrics for complex generated geometry, advancing the feasibility of 3D UGC creation.