Diagnosis
Source-free Active Domain Adaptation for Diabetic Retinopathy Grading Based on Ultra-wide-field Fundus Image
Ran, Jinye, Zhang, Guanghua, Zhang, Ximei, Xie, Juan, Xia, Fan, Zhang, Hao
Domain adaptation (DA) has been widely applied in the diabetic retinopathy (DR) grading of unannotated ultra-wide-field (UWF) fundus images, which can transfer annotated knowledge from labeled color fundus images. However, suffering from huge domain gaps and complex real-world scenarios, the DR grading performance of most mainstream DA is far from that of clinical diagnosis. To tackle this, we propose a novel source-free active domain adaptation (SFADA) in this paper. Specifically, we focus on DR grading problem itself and propose to generate features of color fundus images with continuously evolving relationships of DRs, actively select a few valuable UWF fundus images for labeling with local representation matching, and adapt model on UWF fundus images with DR lesion prototypes. Notably, the SFADA also takes data privacy and computational efficiency into consideration. Extensive experimental results demonstrate that our proposed SFADA achieves state-of-the-art DR grading performance, increasing accuracy by 20.9% and quadratic weighted kappa by 18.63% compared with baseline and reaching 85.36% and 92.38% respectively. These investigations show that the potential of our approach for real clinical practice is promising.
High-tech microscope with ML software for detecting malaria in returning travellers
Malaria is an infectious disease claiming more than half a million lives each year. Because traditional diagnosis takes expertise and the workload is high, an international team of researchers investigated if diagnosis using a new system combining an automatic scanning microscope and AI is feasible in clinical settings. They found that the system identified malaria parasites almost as accurately as experts staffing microscopes used in standard diagnostic procedures. This may help reduce the burden on microscopists and increase the feasible patient load. Each year, more than 200 million people fall sick with malaria and more than half a million of these infections lead to death. The World Health Organization recommends parasite-based diagnosis before starting treatment for the disease caused by Plasmodium parasites.
A Comparison of Residual-based Methods on Fault Detection
Hsu, Chi-Ching, Frusque, Gaetan, Fink, Olga
An important initial step in fault detection for complex industrial systems is gaining an understanding of their health condition. Subsequently, continuous monitoring of this health condition becomes crucial to observe its evolution, track changes over time, and isolate faults. As faults are typically rare occurrences, it is essential to perform this monitoring in an unsupervised manner. Various approaches have been proposed not only to detect faults in an unsupervised manner but also to distinguish between different potential fault types. In this study, we perform a comprehensive comparison between two residual-based approaches: autoencoders, and the input-output models that establish a mapping between operating conditions and sensor readings. We explore the sensor-wise residuals and aggregated residuals for the entire system in both methods. The performance evaluation focuses on three tasks: health indicator construction, fault detection, and health indicator interpretation. To perform the comparison, we utilize the Commercial Modular Aero-Propulsion System Simulation (C-MAPSS) dynamical model, specifically a subset of the turbofan engine dataset containing three different fault types. All models are trained exclusively on healthy data. Fault detection is achieved by applying a threshold that is determined based on the healthy condition. The detection results reveal that both models are capable of detecting faults with an average delay of around 20 cycles and maintain a low false positive rate. While the fault detection performance is similar for both models, the input-output model provides better interpretability regarding potential fault types and the possible faulty components.
CausalOps -- Towards an Industrial Lifecycle for Causal Probabilistic Graphical Models
Maier, Robert, Schlattl, Andreas, Guess, Thomas, Mottok, Jürgen
Causal probabilistic graph-based models have gained widespread utility, enabling the modeling of cause-and-effect relationships across diverse domains. With their rising adoption in new areas, such as automotive system safety and machine learning, the need for an integrated lifecycle framework akin to DevOps and MLOps has emerged. Currently, a process reference for organizations interested in employing causal engineering is missing. To address this gap and foster widespread industrial adoption, we propose CausalOps, a novel lifecycle framework for causal model development and application. By defining key entities, dependencies, and intermediate artifacts generated during causal engineering, we establish a consistent vocabulary and workflow model. This work contextualizes causal model usage across different stages and stakeholders, outlining a holistic view of creating and maintaining them. CausalOps' aim is to drive the adoption of causal methods in practical applications within interested organizations and the causality community.
Adaptation Speed Analysis for Fairness-aware Causal Models
Lin, Yujie, Zhao, Chen, Shao, Minglai, Zhao, Xujiang, Chen, Haifeng
For example, in machine translation tasks, to achieve bidirectional translation between two languages, the source corpus is often used as the target corpus, which involves the training of two models with opposite directions. The question of which one can adapt most quickly to a domain shift is of significant importance in many fields. Specifically, consider an original distribution p that changes due to an unknown intervention, resulting in a modified distribution p*. In aligning p with p*, several factors can affect the adaptation rate, including the causal dependencies between variables in p. In real-life scenarios, however, we have to consider the fairness of the training process, and it is particularly crucial to involve a sensitive variable (bias) present between a cause and an effect variable. To explore this scenario, we examine a simple structural causal model (SCM) with a cause-bias-effect structure, where variable A acts as a sensitive variable between cause (X) and effect (Y). The two models, respectively, exhibit consistent and contrary cause-effect directions in the cause-bias-effect SCM. After conducting unknown interventions on variables within the SCM, we can simulate some kinds of domain shifts for analysis. We then compare the adaptation speeds of two models across four shift scenarios. Additionally, we prove the connection between the adaptation speeds of the two models across all interventions.
How to choose the most appropriate centrality measure? A decision tree approach
Chebotarev, Pavel, Gubanov, Dmitry
Centrality metrics play a crucial role in network analysis, while the choice of specific measures significantly influences the accuracy of conclusions as each measure represents a unique concept of node importance. Among over 400 proposed indices, selecting the most suitable ones for specific applications remains a challenge. Existing approaches -- model-based, data-driven, and axiomatic -- have limitations, requiring association with models, training datasets, or restrictive axioms for each specific application. To address this, we introduce the culling method, which relies on the expert concept of centrality behavior on simple graphs. The culling method involves forming a set of candidate measures, generating a list of as small graphs as possible needed to distinguish the measures from each other, constructing a decision-tree survey, and identifying the measure consistent with the expert's concept. We apply this approach to a diverse set of 40 centralities, including novel kernel-based indices, and combine it with the axiomatic approach. Remarkably, only 13 small 1-trees are sufficient to separate all 40 measures, even for pairs of closely related ones. By adopting simple ordinal axioms like Self-consistency or Bridge axiom, the set of measures can be drastically reduced making the culling survey short. Applying the culling method provides insightful findings on some centrality indices, such as PageRank, Bridging, and dissimilarity-based Eigencentrality measures, among others. The proposed approach offers a cost-effective solution in terms of labor and time, complementing existing methods for measure selection, and providing deeper insights into the underlying mechanisms of centrality measures.
AI in Thyroid Cancer Diagnosis: Techniques, Trends, and Future Directions
Habchi, Yassine, Himeur, Yassine, Kheddar, Hamza, Boukabou, Abdelkrim, Atalla, Shadi, Chouchane, Ammar, Ouamane, Abdelmalik, Mansoor, Wathiq
There has been a growing interest in creating intelligent diagnostic systems to assist medical professionals in analyzing and processing big data for the treatment of incurable diseases. One of the key challenges in this field is detecting thyroid cancer, where advancements have been made using machine learning (ML) and big data analytics to evaluate thyroid cancer prognosis and determine a patient's risk of malignancy. This review paper summarizes a large collection of articles related to artificial intelligence (AI)-based techniques used in the diagnosis of thyroid cancer. Accordingly, a new classification was introduced to classify these techniques based on the AI algorithms used, the purpose of the framework, and the computing platforms used. Additionally, this study compares existing thyroid cancer datasets based on their features. The focus of this study is on how AI-based tools can support the diagnosis and treatment of thyroid cancer, through supervised, unsupervised, or hybrid techniques. It also highlights the progress made and the unresolved challenges in this field. Finally, the future trends and areas of focus in this field are discussed.
PromptMRG: Diagnosis-Driven Prompts for Medical Report Generation
Jin, Haibo, Che, Haoxuan, Lin, Yi, Chen, Hao
Automatic medical report generation (MRG) is of great research value as it has the potential to relieve radiologists from the heavy burden of report writing. Despite recent advancements, accurate MRG remains challenging due to the need for precise clinical understanding and the identification of clinical findings. Moreover, the imbalanced distribution of diseases makes the challenge even more pronounced, as rare diseases are underrepresented in training data, making their diagnostic performance unreliable. To address these challenges, we propose diagnosis-driven prompts for medical report generation (PromptMRG), a novel framework that aims to improve the diagnostic accuracy of MRG with the guidance of diagnosis-aware prompts. Specifically, PromptMRG is based on encoder-decoder architecture with an extra disease classification branch. When generating reports, the diagnostic results from the classification branch are converted into token prompts to explicitly guide the generation process. To further improve the diagnostic accuracy, we design cross-modal feature enhancement, which retrieves similar reports from the database to assist the diagnosis of a query image by leveraging the knowledge from a pre-trained CLIP. Moreover, the disease imbalanced issue is addressed by applying an adaptive logit-adjusted loss to the classification branch based on the individual learning status of each disease, which overcomes the barrier of text decoder's inability to manipulate disease distributions. Experiments on two MRG benchmarks show the effectiveness of the proposed method, where it obtains state-of-the-art clinical efficacy performance on both datasets.
Multi-Source Domain Adaptation for Cross-Domain Fault Diagnosis of Chemical Processes
Montesuma, Eduardo Fernandes, Mulas, Michela, Mboula, Fred Ngolè, Corona, Francesco, Souloumiac, Antoine
Fault diagnosis is an essential component in process supervision. Indeed, it determines which kind of fault has occurred, given that it has been previously detected, allowing for appropriate intervention. Automatic fault diagnosis systems use machine learning for predicting the fault type from sensor readings. Nonetheless, these models are sensible to changes in the data distributions, which may be caused by changes in the monitored process, such as changes in the mode of operation. This scenario is known as Cross-Domain Fault Diagnosis (CDFD). We provide an extensive comparison of single and multi-source unsupervised domain adaptation (SSDA and MSDA respectively) algorithms for CDFD. We study these methods in the context of the Tennessee-Eastmann Process, a widely used benchmark in the chemical industry. We show that using multiple domains during training has a positive effect, even when no adaptation is employed. As such, the MSDA baseline improves over the SSDA baseline classification accuracy by 23% on average. In addition, under the multiple-sources scenario, we improve classification accuracy of the no adaptation setting by 8.4% on average.
Active Learning for Optimal Intervention Design in Causal Models
Zhang, Jiaqi, Cammarata, Louis, Squires, Chandler, Sapsis, Themistoklis P., Uhler, Caroline
Sequential experimental design to discover interventions that achieve a desired outcome is a key problem in various domains including science, engineering and public policy. When the space of possible interventions is large, making an exhaustive search infeasible, experimental design strategies are needed. In this context, encoding the causal relationships between the variables, and thus the effect of interventions on the system, is critical for identifying desirable interventions more efficiently. Here, we develop a causal active learning strategy to identify interventions that are optimal, as measured by the discrepancy between the post-interventional mean of the distribution and a desired target mean. The approach employs a Bayesian update for the causal model and prioritizes interventions using a carefully designed, causally informed acquisition function. This acquisition function is evaluated in closed form, allowing for fast optimization. The resulting algorithms are theoretically grounded with information-theoretic bounds and provable consistency results for linear causal models with known causal graph. We apply our approach to both synthetic data and single-cell transcriptomic data from Perturb-CITE-seq experiments to identify optimal perturbations that induce a specific cell state transition. The causally informed acquisition function generally outperforms existing criteria allowing for optimal intervention design with fewer but carefully selected samples.