Question Answering
MedLM: Exploring Language Models for Medical Question Answering Systems
Yagnik, Niraj, Jhaveri, Jay, Sharma, Vivek, Pila, Gabriel, Ben, Asma, Shang, Jingbo
In the face of rapidly expanding online medical literature, automated systems for aggregating and summarizing information are becoming increasingly crucial for healthcare professionals and patients. Large Language Models (LLMs), with their advanced generative capabilities, have shown promise in various NLP tasks, and their potential in the healthcare domain, particularly for Closed-Book Generative QnA, is significant. However, the performance of these models in domain-specific tasks such as medical Q&A remains largely unexplored. This study aims to fill this gap by comparing the performance of general and medical-specific distilled LMs for medical Q&A. We aim to evaluate the effectiveness of fine-tuning domain-specific LMs and compare the performance of different families of Language Models. The study will address critical questions about these models' reliability, comparative performance, and effectiveness in the context of medical Q&A. The findings will provide valuable insights into the suitability of different LMs for specific applications in the medical domain.
Developing ChatGPT for Biology and Medicine: A Complete Review of Biomedical Question Answering
ChatGPT explores a strategic blueprint of question answering (QA) in delivering medical diagnosis, treatment recommendations, and other healthcare support. This is achieved through the increasing incorporation of medical domain data via natural language processing (NLP) and multimodal paradigms. By transitioning the distribution of text, images, videos, and other modalities from the general domain to the medical domain, these techniques have expedited the progress of medical domain question answering (MDQA). They bridge the gap between human natural language and sophisticated medical domain knowledge or expert manual annotations, handling large-scale, diverse, unbalanced, or even unlabeled data analysis scenarios in medical contexts. Central to our focus is the utilizing of language models and multimodal paradigms for medical question answering, aiming to guide the research community in selecting appropriate mechanisms for their specific medical research requirements. Specialized tasks such as unimodal-related question answering, reading comprehension, reasoning, diagnosis, relation extraction, probability modeling, and others, as well as multimodal-related tasks like vision question answering, image caption, cross-modal retrieval, report summarization, and generation, are discussed in detail. Each section delves into the intricate specifics of the respective method under consideration. This paper highlights the structures and advancements of medical domain explorations against general domain methods, emphasizing their applications across different tasks and datasets. It also outlines current challenges and opportunities for future medical domain research, paving the way for continued innovation and application in this rapidly evolving field.
Q&A Prompts: Discovering Rich Visual Clues through Mining Question-Answer Prompts for VQA requiring Diverse World Knowledge
With the breakthrough of multi-modal large language models, answering complex visual questions that demand advanced reasoning abilities and world knowledge has become a much more important testbed for developing AI models than ever. However, equipping AI models with robust cross-modality reasoning ability remains challenging since the cognition scheme of humans has not been understood systematically. In this paper, we believe that if we can collect visual clues in the given image as much as possible, we will recognize the image more accurately, understand the question better, recall relevant knowledge more easily, and finally reason out the answer. We discover these rich visual clues by mining question-answer pairs in images and sending them into multi-modal large language models as prompts. We call the proposed method Q&A Prompts. Specifically, we first use the image-answer pairs and the corresponding questions in the training set as inputs and outputs to train a visual question generation model. Then, we use an image tagging model to identify various instances and send packaged image-tag pairs into the visual question generation model to generate relevant questions with the extracted image tags as answers. Finally, we encode these generated question-answer pairs as prompts with a visual-aware prompting module and send them into pre-trained multi-modal large language models to reason out the final answers. Experimental results show that, compared with state-of-the-art methods, our Q&A Prompts achieves substantial improvements on the challenging visual question answering datasets requiring reasoning over diverse world knowledge, such as OK-VQA and A-OKVQA.
Privacy-Preserving Neural Graph Databases
Hu, Qi, Li, Haoran, Bai, Jiaxin, Song, Yangqiu
In the era of big data and rapidly evolving information systems, efficient and accurate data retrieval has become increasingly crucial. Neural graph databases (NGDBs) have emerged as a powerful paradigm that combines the strengths of graph databases (graph DBs) and neural networks to enable efficient storage, retrieval, and analysis of graph-structured data. The usage of neural embedding storage and complex neural logical query answering provides NGDBs with generalization ability. When the graph is incomplete, by extracting latent patterns and representations, neural graph databases can fill gaps in the graph structure, revealing hidden relationships and enabling accurate query answering. Nevertheless, this capability comes with inherent trade-offs, as it introduces additional privacy risks to the database. Malicious attackers can infer more sensitive information in the database using well-designed combinatorial queries, such as by comparing the answer sets of where Turing Award winners born before 1950 and after 1940 lived, the living places of Turing Award winner Hinton are probably exposed, although the living places may have been deleted in the training due to the privacy concerns. In this work, inspired by the privacy protection in graph embeddings, we propose a privacy-preserving neural graph database (P-NGDB) to alleviate the risks of privacy leakage in NGDBs. We introduce adversarial training techniques in the training stage to force the NGDBs to generate indistinguishable answers when queried with private information, enhancing the difficulty of inferring sensitive information through combinations of multiple innocuous queries. Extensive experiment results on three datasets show that P-NGDB can effectively protect private information in the graph database while delivering high-quality public answers responses to queries.
BERTologyNavigator: Advanced Question Answering with BERT-based Semantics
Rajpal, Shreya, Usbeck, Ricardo
The development and integration of knowledge graphs and language models has significance in artificial intelligence and natural language processing. In this study, we introduce the BERTologyNavigator -- a two-phased system that combines relation extraction techniques and BERT embeddings to navigate the relationships within the DBLP Knowledge Graph (KG). Our approach focuses on extracting one-hop relations and labelled candidate pairs in the first phases. This is followed by employing BERT's CLS embeddings and additional heuristics for relation selection in the second phase. Our system reaches an F1 score of 0.2175 on the DBLP QuAD Final test dataset for Scholarly QALD and 0.98 F1 score on the subset of the DBLP QuAD test dataset during the QA phase.
QAnswer: Towards Question Answering Search over Websites
Guo, Kunpeng, Defretiere, Clement, Diefenbach, Dennis, Gravier, Christophe, Gourru, Antoine
Question Answering (QA) is increasingly used by search engines to provide results to their end-users, yet very few websites currently use QA technologies for their search functionality. To illustrate the potential of QA technologies for the website search practitioner, we demonstrate web searches that combine QA over knowledge graphs and QA over free text -- each being usually tackled separately. We also discuss the different benefits and drawbacks of both approaches for web site searches. We use the case studies made of websites hosted by the Wikimedia Foundation (namely Wikipedia and Wikidata). Differently from a search engine (e.g. Google, Bing, etc), the data are indexed integrally, i.e. we do not index only a subset, and they are indexed exclusively, i.e. we index only data available on the corresponding website.
Fine-tuning Strategies for Domain Specific Question Answering under Low Annotation Budget Constraints
Guo, Kunpeng, Diefenbach, Dennis, Gourru, Antoine, Gravier, Christophe
The progress introduced by pre-trained language models and their fine-tuning has resulted in significant improvements in most downstream NLP tasks. The unsupervised training of a language model combined with further target task fine-tuning has become the standard QA fine-tuning procedure. In this work, we demonstrate that this strategy is sub-optimal for fine-tuning QA models, especially under a low QA annotation budget, which is a usual setting in practice due to the extractive QA labeling cost. We draw our conclusions by conducting an exhaustive analysis of the performance of the alternatives of the sequential fine-tuning strategy on different QA datasets. Based on the experiments performed, we observed that the best strategy to fine-tune the QA model in low-budget settings is taking a pre-trained language model (PLM) and then fine-tuning PLM with a dataset composed of the target dataset and SQuAD dataset. With zero extra annotation effort, the best strategy outperforms the standard strategy by 2.28% to 6.48%. Our experiments provide one of the first investigations on how to best fine-tune a QA system under a low budget and are therefore of the utmost practical interest to the QA practitioners.
Generalizing Visual Question Answering from Synthetic to Human-Written Questions via a Chain of QA with a Large Language Model
Kim, Taehee, Cho, Yeongjae, Shin, Heejun, Jo, Yohan, Shin, Dongmyung
Visual question answering (VQA) is a task where an image is given, and a series of questions are asked about the image. To build an efficient VQA algorithm, a large amount of QA data is required which is very expensive. Generating synthetic QA pairs based on templates is a practical way to obtain data. However, VQA models trained on those data do not perform well on complex, human-written questions. To address this issue, we propose a new method called {\it chain of QA for human-written questions} (CoQAH). CoQAH utilizes a sequence of QA interactions between a large language model and a VQA model trained on synthetic data to reason and derive logical answers for human-written questions. We tested the effectiveness of CoQAH on two types of human-written VQA datasets for 3D-rendered and chest X-ray images and found that it achieved state-of-the-art accuracy in both types of data. Notably, CoQAH outperformed general vision-language models, VQA models, and medical foundation models with no finetuning.
Automated Answer Validation using Text Similarity
Ganesan, Balaji, Ravikumar, Arjun, Piplani, Lakshay, Bhaumik, Rini, Padmanaban, Dhivya, Narasimhamurthy, Shwetha, Adhikary, Chetan, Deshapogu, Subhash
Automated answer validation can help improve learning outcomes by providing appropriate feedback to learners, and by making question answering systems and online learning solutions more widely available. There have been some works in science question answering which show that information retrieval methods outperform neural methods, especially in the multiple choice version of this problem. We implement Siamese neural network models and produce a generalised solution to this problem. We compare our supervised model with other text similarity based solutions.
Advancing Surgical VQA with Scene Graph Knowledge
Yuan, Kun, Kattel, Manasi, Lavanchy, Joel L., Navab, Nassir, Srivastav, Vinkle, Padoy, Nicolas
Modern operating room is becoming increasingly complex, requiring innovative intra-operative support systems. While the focus of surgical data science has largely been on video analysis, integrating surgical computer vision with language capabilities is emerging as a necessity. Our work aims to advance Visual Question Answering (VQA) in the surgical context with scene graph knowledge, addressing two main challenges in the current surgical VQA systems: removing question-condition bias in the surgical VQA dataset and incorporating scene-aware reasoning in the surgical VQA model design. First, we propose a Surgical Scene Graph-based dataset, SSG-QA, generated by employing segmentation and detection models on publicly available datasets. We build surgical scene graphs using spatial and action information of instruments and anatomies. These graphs are fed into a question engine, generating diverse QA pairs. Our SSG-QA dataset provides a more complex, diverse, geometrically grounded, unbiased, and surgical action-oriented dataset compared to existing surgical VQA datasets. We then propose SSG-QA-Net, a novel surgical VQA model incorporating a lightweight Scene-embedded Interaction Module (SIM), which integrates geometric scene knowledge in the VQA model design by employing cross-attention between the textual and the scene features. Our comprehensive analysis of the SSG-QA dataset shows that SSG-QA-Net outperforms existing methods across different question types and complexities. We highlight that the primary limitation in the current surgical VQA systems is the lack of scene knowledge to answer complex queries. We present a novel surgical VQA dataset and model and show that results can be significantly improved by incorporating geometric scene features in the VQA model design. The source code and the dataset will be made publicly available at: https://github.com/CAMMA-public/SSG-QA