Prediction of genetic biomarkers, e.g., microsatellite instability and BRAF in colorectal cancer is crucial for clinical decision making. In this paper, we propose a whole slide image (WSI) based genetic biomarker prediction method via prompting techniques. Our work aims at addressing the following challenges: (1) extracting foreground instances related to genetic biomarkers from gigapixel WSIs, and (2) the interaction among the fine-grained pathological components in WSIs. Specifically, we leverage large language models to generate medical prompts that serve as prior knowledge in extracting instances associated with genetic biomarkers. We adopt a coarse-to-fine approach to mine biomarker information within the tumor microenvironment. This involves extracting instances related to genetic biomarkers using coarse medical prior knowledge, grouping pathology instances into fine-grained pathological components and mining their interactions. Experimental results on two colorectal cancer datasets show the superiority of our method, achieving 91.49% in AUC for MSI classification. The analysis further shows the clinical interpretability of our method.

While advancements in Vision Language Models (VLMs) have significantly improved the alignment of visual and textual data, these models primarily focus on aligning images with short descriptive captions. This focus limits their ability to handle complex text interactions, particularly with longer texts such as lengthy captions or documents, which have not been extensively explored yet. In this paper, we introduce Meet At The Embedding (MATE), a novel approach that combines the capabilities of VLMs with Large Language Models (LLMs) to overcome this challenge without the need for additional image-long text pairs. Specifically, we replace the text encoder of the VLM with a pretrained LLM-based encoder that excels in understanding long texts. To bridge the gap between VLM and LLM, MATE incorporates a projection module that is trained in a multi-stage manner. It starts by aligning the embeddings from the VLM text encoder with those from the LLM using extensive text pairs. This module is then employed to seamlessly align image embeddings closely with LLM embeddings. We propose two new cross-modal retrieval benchmarks to assess the task of connecting images with long texts (lengthy captions / documents). Extensive experimental results demonstrate that MATE effectively connects images with long texts, uncovering diverse semantic relationships.

Since the release of ChatGPT in November 2022 [61], GenAI has become increasingly popular in assisting people with written, auditory, and visual tasks [45, 58, 78]. In research, GenAI offers a new approach to manuscript writing, as it can handle tasks ranging from text improvement suggestions to speech-to-text translation and even crafting initial drafts [45, 52]. Its ability to understand context and generate human-like and grammatically accurate responses fosters innovative brainstorming and enhances the quality and readability of research publications [5]. However, along with GenAI's potential to augment research activities, concerns about transparency, academic integrity, and the urgency of maintaining the credibility of research work have emerged [21, 54, 73, 78]. Despite the growing interest in using GenAI for manuscript writing and research activities [45, 64], many researchers hesitate to acknowledge its use in their papers. This is illustrated by several instances where research publications with undisclosed GenAI use were identified by readers (e.g., [53, 71, 72, 79]). Studies have identified the phenomenon of AI aversion, where AI-generated content, even if factual, is often perceived as inaccurate and misleading [12, 56] and disclosing its use can negatively impact readers' satisfaction and perception of the authors' qualifications and effort [69]. Therefore, researchers' hesitancy is partly due to their fear that acknowledging GenAI use might damage

AI agents have become increasingly significant in various domains, enabling autonomous decision-making and problem-solving. To function effectively, these agents require a planning process that determines the best course of action and then executes the planned actions. In this paper, we present an efficient on-device Planner-Action framework that separates planning and action execution into two distinct components: a planner agent based on Phi-3 Mini, a 3.8 billion parameter LLM optimized for edge devices, and an action agent using the Octopus model for function execution. The planner agent first responds to user queries by decomposing tasks into a sequence of sub-steps, which are then executed by the action agent. To optimize performance on resource-constrained devices, we employ model fine-tuning instead of in-context learning, reducing computational costs and energy consumption while improving response times. Our approach involves using GPT-4 to generate diverse planning queries and responses based on available functions, with subsequent validations to ensure data quality. We fine-tune the Phi-3 Mini model on this curated dataset, achieving a 97\% success rate in our in-domain test environment. To address multi-domain planning challenges, we developed a multi-LoRA training method that merges weights from LoRAs trained on distinct function subsets. This approach enables flexible handling of complex, multi-domain queries while maintaining computational efficiency on resource-constrained devices. To support further research, we have open-sourced our model weights at \url{https://huggingface.co/NexaAIDev/octopus-planning}. For the demo, please refer to \url{https://www.nexa4ai.com/octo-planner}.

The rapid development of diffusion models (DMs) has significantly advanced image and video applications, making "what you want is what you see" a reality. Among these, video editing has gained substantial attention and seen a swift rise in research activity, necessitating a comprehensive and systematic review of the existing literature. This paper reviews diffusion model-based video editing techniques, including theoretical foundations and practical applications. We begin by overviewing the mathematical formulation and image domain's key methods. Subsequently, we categorize video editing approaches by the inherent connections of their core technologies, depicting evolutionary trajectory. This paper also dives into novel applications, including point-based editing and pose-guided human video editing. Additionally, we present a comprehensive comparison using our newly introduced V2VBench. Building on the progress achieved to date, the paper concludes with ongoing challenges and potential directions for future research.

This study identifies the potential vulnerabilities of Large Language Models (LLMs) to 'jailbreak' attacks, specifically focusing on the Arabic language and its various forms. While most research has concentrated on English-based prompt manipulation, our investigation broadens the scope to investigate the Arabic language. We initially tested the AdvBench benchmark in Standardized Arabic, finding that even with prompt manipulation techniques like prefix injection, it was insufficient to provoke LLMs into generating unsafe content. However, when using Arabic transliteration and chatspeak (or arabizi), we found that unsafe content could be produced on platforms like OpenAI GPT-4 and Anthropic Claude 3 Sonnet. Our findings suggest that using Arabic and its various forms could expose information that might remain hidden, potentially increasing the risk of jailbreak attacks. We hypothesize that this exposure could be due to the model's learned connection to specific words, highlighting the need for more comprehensive safety training across all language forms.

Large language models (LLMs) have demonstrated the world with the sparks of artificial general intelligence (AGI). One opinion, especially from some startups working on LLMs, argues that an LLM with nearly unlimited context length can realize AGI. However, they might be too optimistic about the long-context capability of (existing) LLMs -- (1) Recent literature has shown that their effective context length is significantly smaller than their claimed context length; and (2) Our reasoning-in-a-haystack experiments further demonstrate that simultaneously finding the relevant information from a long context and conducting (simple) reasoning is nearly impossible. In this paper, we envision a pathway from LLMs to AGI through the integration of \emph{memory}. We believe that AGI should be a system where LLMs serve as core processors. In addition to raw data, the memory in this system would store a large number of important conclusions derived from reasoning processes. Compared with retrieval-augmented generation (RAG) that merely processing raw data, this approach not only connects semantically related information closer, but also simplifies complex inferences at the time of querying. As an intermediate stage, the memory will likely be in the form of natural language descriptions, which can be directly consumed by users too. Ultimately, every agent/person should have its own large personal model, a deep neural network model (thus \emph{AI-native}) that parameterizes and compresses all types of memory, even the ones cannot be described by natural languages. Finally, we discuss the significant potential of AI-native memory as the transformative infrastructure for (proactive) engagement, personalization, distribution, and social in the AGI era, as well as the incurred privacy and security challenges with preliminary solutions.

We present a simple variable quantization approach that quantizes different layers of a large language model (LLM) at different bit levels. Specifically, we quantize the most important layers to higher bit precision and less important layers to lower bits to achieve floating point quantization levels. We propose two effective strategies to measure the importance of layers within LLMs: the first measures the importance of a layer based on how different its output embeddings are from the input embeddings (the higher the better); the second estimates the importance of a layer using the number of layer weights that are much larger than average (the smaller the better). We show that quantizing different layers at varying bits according to our importance scores results in minimal performance drop with a far more compressed model size. Finally, we present several practical key takeaways from our variable layer-wise quantization experiments: (a) LLM performance under variable quantization remains close to the original model until 25-50% of layers are moved in lower quantization using our proposed ordering but only until 5-10% if moved using no specific ordering; (b) Quantizing LLMs to lower bits performs substantially better than pruning unless extreme quantization (2-bit) is used; and (c) Layer-wise quantization to lower bits works better in the case of larger LLMs with more layers compared to smaller LLMs with fewer layers. The code used to run the experiments is available at: https://github.com/RazvanDu/LayerwiseQuant.

Retrieval-augmented generation (RAG) has demonstrated effectiveness in mitigating the hallucination problem of large language models (LLMs). However, the difficulty of aligning the retriever with the diverse LLMs' knowledge preferences inevitably poses an inevitable challenge in developing a reliable RAG system. To address this issue, we propose DPA-RAG, a universal framework designed to align diverse knowledge preferences within RAG systems. Specifically, we initially introduce a preference knowledge construction pipline and incorporate five novel query augmentation strategies to alleviate preference data scarcity. Based on preference data, DPA-RAG accomplishes both external and internal preference alignment: 1) It jointly integrate pair-wise, point-wise, and contrastive preference alignment abilities into the reranker, achieving external preference alignment among RAG components. 2) It further introduces a pre-aligned stage before vanilla Supervised Fine-tuning (SFT), enabling LLMs to implicitly capture knowledge aligned with their reasoning preferences, achieving LLMs' internal alignment. Experimental results across four knowledge-intensive QA datasets demonstrate that DPA-RAG outperforms all baselines and seamlessly integrates both black-box and open-sourced LLM readers. Further qualitative analysis and discussions also provide empirical guidance for achieving reliable RAG systems. Our code is publicly available at https://github.com/dongguanting/DPA-RAG.

The latest advancements in machine learning, specifically in foundation models, are revolutionizing the frontiers of existing software engineering (SE) processes. This is a bi-directional phenomona, where 1) software systems are now challenged to provide AI-enabled features to their users, and 2) AI is used to automate tasks within the software development lifecycle. In an era where sustainability is a pressing societal concern, our community needs to adopt a long-term plan enabling a conscious transformation that aligns with environmental sustainability values. In this paper, we reflect on the impact of adopting environmentally friendly practices to create AI-enabled software systems and make considerations on the environmental impact of using foundation models for software development.