Existing work on large language model (LLM) personalization assigned different responding roles to LLM, but overlooked the diversity of questioners. In this work, we propose a new form of questioner-aware LLM personalization, generating different responses even for the same query from different questioners. We design a dual-tower model architecture with a cross-questioner general encoder and a questioner-specific encoder. We further apply contrastive learning with multi-view augmentation, pulling close the dialogue representations of the same questioner, while pulling apart those of different questioners. To mitigate the impact of question diversity on questioner-contrastive learning, we cluster the dialogues based on question similarity and restrict the scope of contrastive learning within each cluster. We also build a multi-questioner dataset from English and Chinese scripts and WeChat records, called MQDialog, containing 173 questioners and 12 responders. Extensive evaluation with different metrics shows a significant improvement in the quality of personalized response generation.

Current Large Language Models (LLMs) for understanding proteins primarily treats amino acid sequences as a text modality. Meanwhile, Protein Language Models (PLMs), such as ESM-2, have learned massive sequential evolutionary knowledge from the universe of natural protein sequences. Furthermore, structure-based encoders like ProteinMPNN learn the structural information of proteins through Graph Neural Networks. However, whether the incorporation of protein encoders can enhance the protein understanding of LLMs has not been explored. To bridge this gap, we propose EvoLlama, a multimodal framework that connects a structure-based encoder, a sequence-based protein encoder and an LLM for protein understanding. EvoLlama consists of a ProteinMPNN structure encoder, an ESM-2 protein sequence encoder, a multimodal projector to align protein and text representations and a Llama-3 text decoder. To train EvoLlama, we fine-tune it on protein-oriented instructions and protein property prediction datasets verbalized via natural language instruction templates. Our experiments show that EvoLlama's protein understanding capabilities have been significantly enhanced, outperforming other fine-tuned protein-oriented LLMs in zero-shot settings by an average of 1%-8% and surpassing the state-of-the-art baseline with supervised fine-tuning by an average of 6%. On protein property prediction datasets, our approach achieves promising results that are competitive with state-of-the-art task-specific baselines. We will release our code in a future version.

Rare diseases, despite their low individual incidence, collectively impact around 300 million people worldwide due to the huge number of diseases. The complexity of symptoms and the shortage of specialized doctors with relevant experience make diagnosing and treating rare diseases more challenging than common diseases. Recently, agents powered by large language models (LLMs) have demonstrated notable improvements across various domains. In the medical field, some agent methods have outperformed direct prompts in question-answering tasks from medical exams. However, current agent frameworks lack adaptation for real-world clinical scenarios, especially those involving the intricate demands of rare diseases. To address these challenges, we present RareAgents, the first multi-disciplinary team of LLM-based agents tailored to the complex clinical context of rare diseases. RareAgents integrates advanced planning capabilities, memory mechanisms, and medical tools utilization, leveraging Llama-3.1-8B/70B as the base model. Experimental results show that RareAgents surpasses state-of-the-art domain-specific models, GPT-4o, and existing agent frameworks in both differential diagnosis and medication recommendation for rare diseases. Furthermore, we contribute a novel dataset, MIMIC-IV-Ext-Rare, derived from MIMIC-IV, to support further advancements in this field.

Simulation for managing the massive machine learning (ML) clusters is also useful (perhaps more so) to extrapolate beyond what is and large-scale distributed training jobs. In this paper, we currently available, which is paramount for strategic decision build Echo to tackle three key challenges in large-scale training making such as capacity planning [24, 38] that involve many simulation: (1) tracing the runtime training workloads at what-if questions with significant impact. For example, what each device in an ex-situ fashion so we can use a single device speed-up can be achieved by scaling the current cluster by a to obtain the actual execution graphs of 1K-GPU training, (2) factor of 3, or by increasing the network bandwidth by 2x? accurately estimating the collective communication without This also greatly facilitates the development of new optimizations, high overheads of discrete-event based network simulation, which only need to be prototyped on a small scale for and (3) accounting for the interference-induced computation the simulator to extrapolate its potential benefits on a large slowdown from overlapping communication and computation scale quantitatively.

Drafting radiology reports is a complex task requiring flexibility, where radiologists tail content to available information and particular clinical demands. However, most current radiology report generation (RRG) models are constrained to a fixed task paradigm, such as predicting the full ``finding'' section from a single image, inherently involving a mismatch between inputs and outputs. The trained models lack the flexibility for diverse inputs and could generate harmful, input-agnostic hallucinations. To bridge the gap between current RRG models and the clinical demands in practice, we first develop a data generation pipeline to create a new MIMIC-RG4 dataset, which considers four common radiology report drafting scenarios and has perfectly corresponded input and output. Secondly, we propose a novel large language model (LLM) based RRG framework, namely LLM-RG4, which utilizes LLM's flexible instruction-following capabilities and extensive general knowledge. We further develop an adaptive token fusion module that offers flexibility to handle diverse scenarios with different input combinations, while minimizing the additional computational burden associated with increased input volumes. Besides, we propose a token-level loss weighting strategy to direct the model's attention towards positive and uncertain descriptions. Experimental results demonstrate that LLM-RG4 achieves state-of-the-art performance in both clinical efficiency and natural language generation on the MIMIC-RG4 and MIMIC-CXR datasets. We quantitatively demonstrate that our model has minimal input-agnostic hallucinations, whereas current open-source models commonly suffer from this problem.

Large Language Models (LLMs) demonstrate exceptional performance across diverse tasks by leveraging both pre-trained knowledge (i.e., parametric knowledge) and external knowledge (i.e., contextual knowledge). While substantial efforts have been made to leverage both forms of knowledge, scenarios in which the model lacks any relevant knowledge remain underexplored. Such limitations can result in issues like hallucination, causing reduced reliability and potential risks in high-stakes applications. To address such limitations, this paper extends the task scope to encompass cases where the user's request cannot be fulfilled due to the lack of relevant knowledge. To this end, we introduce Contrastive Decoding with Abstention (CDA), a training-free decoding method that empowers LLMs to generate responses when relevant knowledge is available and to abstain otherwise. CDA evaluates the relevance of each knowledge for a given query, adaptively determining which knowledge to prioritize or which to completely ignore. Extensive experiments with four LLMs on three question-answering datasets demonstrate that CDA can effectively perform accurate generation and abstention simultaneously. These findings highlight CDA's potential to broaden the applicability of LLMs, enhancing reliability and preserving user trust.

Character-based dialogue (aka role-playing) enables users to freely customize characters for interaction, which often relies on LLMs, raising the need to evaluate LLMs' character customization capability. However, existing benchmarks fail to ensure a robust evaluation as they often only involve a single character category or evaluate limited dimensions. Moreover, the sparsity of character features in responses makes feature-focused generative evaluation both ineffective and inefficient. To address these issues, we propose CharacterBench, the largest bilingual generative benchmark, with 22,859 human-annotated samples covering 3,956 characters from 25 detailed character categories. We define 11 dimensions of 6 aspects, classified as sparse and dense dimensions based on whether character features evaluated by specific dimensions manifest in each response. We enable effective and efficient evaluation by crafting tailored queries for each dimension to induce characters' responses related to specific dimensions. Further, we develop CharacterJudge model for cost-effective and stable evaluations. Experiments show its superiority over SOTA automatic judges (e.g., GPT-4) and our benchmark's potential to optimize LLMs' character customization. Our repository is at https://github.com/thu-coai/CharacterBench.

Large language models (LLMs) have demonstrated impressive multilingual understanding and reasoning capabilities, driven by extensive pre-training multilingual corpora and fine-tuning instruction data. However, a performance gap persists between high-resource and low-resource language tasks due to language imbalance in the pre-training corpus, even using more low-resource data during fine-tuning. To alleviate this issue, we propose LinguaLIFT, a two-stage instruction tuning framework for advancing low-resource language tasks. An additional language alignment layer is first integrated into the LLM to adapt a pre-trained multilingual encoder, thereby enhancing multilingual alignment through code-switched fine-tuning. The second stage fine-tunes LLM with English-only instruction data while freezing the language alignment layer, allowing LLM to transfer task-specific capabilities from English to low-resource language tasks. Additionally, we introduce the Multilingual Math World Problem (MMWP) benchmark, which spans 21 low-resource, 17 medium-resource, and 10 high-resource languages, enabling comprehensive evaluation of multilingual reasoning. Experimental results show that LinguaLIFT outperforms several competitive baselines across MMWP and other widely used benchmarks.

In-context learning (ICL) enables large language models (LLMs) to adapt to new tasks without fine-tuning by leveraging contextual information provided within a prompt. However, ICL relies not only on contextual clues but also on the global knowledge acquired during pretraining for the next token prediction. Analyzing this process has been challenging due to the complex computational circuitry of LLMs. This paper investigates the balance between in-context information and pretrained bigram knowledge in token prediction, focusing on the induction head mechanism, a key component in ICL. Leveraging the fact that a two-layer transformer can implement the induction head mechanism with associative memories, we theoretically analyze the logits when a two-layer transformer is given prompts generated by a bigram model. In the experiments, we design specific prompts to evaluate whether the outputs of a two-layer transformer align with the theoretical results.

Large Language Models (LLMs) are increasingly used in production systems, powering applications such as chatbots, summarization, and question answering. Despite their success, controlling the length of their response remains a significant challenge, particularly for tasks requiring structured outputs or specific levels of detail. In this work, we propose a method to adapt pre-trained decoder-only LLMs for precise control of response length. Our approach incorporates a secondary length-difference positional encoding (LDPE) into the input embeddings, which counts down to a user-set response termination length. Fine-tuning with LDPE allows the model to learn to terminate responses coherently at the desired length, achieving mean token errors of less than 3 tokens. We also introduce Max New Tokens++, an extension that enables flexible upper-bound length control, rather than an exact target. Experimental results on tasks such as question answering and document summarization demonstrate that our method enables precise length control without compromising response quality.