Large language models are increasingly customized through fine-tuning and other adaptations, creating challenges in enforcing licensing terms and managing downstream impacts. Tracking model origins is crucial both for protecting intellectual property and for identifying derived models when biases or vulnerabilities are discovered in foundation models. We address this challenge by developing a framework for testing model provenance: Whether one model is derived from another. Our approach is based on the key observation that real-world model derivations preserve significant similarities in model outputs that can be detected through statistical analysis. Using only black-box access to models, we employ multiple hypothesis testing to compare model similarities against a baseline established by unrelated models. On two comprehensive real-world benchmarks spanning models from 30M to 4B parameters and comprising over 600 models, our tester achieves 90-95% precision and 80-90% recall in identifying derived models. These results demonstrate the viability of systematic provenance verification in production environments even when only API access is available.

As AI research surges in both impact and volume, conferences have imposed submission limits to maintain paper quality and alleviate organizational pressure. In this work, we examine the fairness of desk-rejection systems under submission limits and reveal that existing practices can result in substantial inequities. Specifically, we formally define the paper submission limit problem and identify a critical dilemma: when the number of authors exceeds three, it becomes impossible to reject papers solely based on excessive submissions without negatively impacting innocent authors. Thus, this issue may unfairly affect early-career researchers, as their submissions may be penalized due to co-authors with significantly higher submission counts, while senior researchers with numerous papers face minimal consequences. To address this, we propose an optimization-based fairness-aware desk-rejection mechanism and formally define two fairness metrics: individual fairness and group fairness. We prove that optimizing individual fairness is NP-hard, whereas group fairness can be efficiently optimized via linear programming. Through case studies, we demonstrate that our proposed system ensures greater equity than existing methods, including those used in CVPR 2025, offering a more socially just approach to managing excessive submissions in AI conferences.

While recent AI-for-math has made strides in pure mathematics, areas of applied mathematics, particularly PDEs, remain underexplored despite their significant real-world applications. We present PDE-Controller, a framework that enables large language models (LLMs) to control systems governed by partial differential equations (PDEs). Our approach enables LLMs to transform informal natural language instructions into formal specifications, and then execute reasoning and planning steps to improve the utility of PDE control. We build a holistic solution comprising datasets (both human-written cases and 2 million synthetic samples), math-reasoning models, and novel evaluation metrics, all of which require significant effort. Our PDE-Controller significantly outperforms prompting the latest open-source and GPT models in reasoning, autoformalization, and program synthesis, achieving up to a 62% improvement in utility gain for PDE control. By bridging the gap between language generation and PDE systems, we demonstrate the potential of LLMs in addressing complex scientific and engineering challenges. We will release all data, model checkpoints, and code at https://pde-controller.github.io/.

Monoclonal antibodies (mAbs) represent one of the most prevalent FDA-approved modalities for treating autoimmune diseases, infectious diseases, and cancers. However, discovery and development of therapeutic antibodies remains a time-consuming and expensive process. Recent advancements in machine learning (ML) and artificial intelligence (AI) have shown significant promise in revolutionizing antibody discovery and optimization. In particular, models that predict antibody biological activity enable in-silico evaluation of binding and functional properties; such models can prioritize antibodies with the highest likelihoods of success in costly and time-intensive laboratory testing procedures. We here explore an AI model for predicting the binding and receptor blocking activity of antibodies against influenza A hemagglutinin (HA) antigens. Our present model is developed with the MAMMAL framework for biologics discovery to predict antibody-antigen interactions using only sequence information. To evaluate the model's performance, we tested it under various data split conditions to mimic real-world scenarios. Our models achieved an AUROC $\geq$ 0.91 for predicting the activity of existing antibodies against seen HAs and an AUROC of 0.9 for unseen HAs. For novel antibody activity prediction, the AUROC was 0.73, which further declined to 0.63-0.66 under stringent constraints on similarity to existing antibodies. These results demonstrate the potential of AI foundation models to transform antibody design by reducing dependence on extensive laboratory testing and enabling more efficient prioritization of antibody candidates. Moreover, our findings emphasize the critical importance of diverse and comprehensive antibody datasets to improve the generalization of prediction models, particularly for novel antibody development.

Hierarchical Merging is a technique commonly used to summarize very long texts ($>$100K tokens) by breaking down the input into smaller sections, summarizing those sections individually, and then merging or combining those summaries into a final coherent summary. Although it helps address the limitations of large language models (LLMs) with fixed input length constraints, the recursive merging process can amplify LLM hallucinations, increasing the risk of factual inaccuracies. In this paper, we seek to mitigate hallucinations by enriching hierarchical merging with context from the source document. Specifically, we propose different approaches to contextual augmentation ranging from \emph{replacing} intermediate summaries with relevant input context, to \emph{refining} them while using the context as supporting evidence, and \emph{aligning} them implicitly (via citations) to the input. Experimental results on datasets representing legal and narrative domains show that contextual augmentation consistently outperforms zero-shot and hierarchical merging baselines for the Llama 3.1 model family. Our analysis further reveals that refinement methods tend to perform best when paired with extractive summarization for identifying relevant input.

As they become more capable, large language models (LLMs) have continued to rapidly increase in size. This has exacerbated the difficulty in running state of the art LLMs on small, edge devices. Standard techniques advocate solving this problem through lossy compression techniques such as quantization or pruning. However, such compression techniques are lossy, and have been shown to change model behavior in unpredictable manners. We propose Huff-LLM, an \emph{end-to-end, lossless} model compression method that lets users store LLM weights in compressed format \emph{everywhere} -- cloud, disk, main memory, and even in on-chip memory/buffers. This allows us to not only load larger models in main memory, but also reduces bandwidth required to load weights on chip, and makes more efficient use of on-chip weight buffers. In addition to the memory savings achieved via compression, we also show latency and energy efficiency improvements when performing inference with the compressed model.

Recent years have witnessed rapid advances in graph representation learning, with the continuous embedding approach emerging as the dominant paradigm. However, such methods encounter issues regarding parameter efficiency, interpretability, and robustness. Thus, Quantized Graph Representation (QGR) learning has recently gained increasing interest, which represents the graph structure with discrete codes instead of conventional continuous embeddings. Given its analogous representation form to natural language, QGR also possesses the capability to seamlessly integrate graph structures with large language models (LLMs). As this emerging paradigm is still in its infancy yet holds significant promise, we undertake this thorough survey to promote its rapid future prosperity. We first present the background of the general quantization methods and their merits. Moreover, we provide an in-depth demonstration of current QGR studies from the perspectives of quantized strategies, training objectives, distinctive designs, knowledge graph quantization, and applications. We further explore the strategies for code dependence learning and integration with LLMs. At last, we give discussions and conclude future directions, aiming to provide a comprehensive picture of QGR and inspire future research.

Tokenization is fundamental to Natural Language Processing (NLP), directly impacting model efficiency and linguistic fidelity. While Byte Pair Encoding (BPE) is widely used in Large Language Models (LLMs), it often disregards morpheme boundaries, leading to suboptimal segmentation, particularly in morphologically rich languages. We introduce MorphBPE, a morphology-aware extension of BPE that integrates linguistic structure into subword tokenization while preserving statistical efficiency. Additionally, we propose two morphology-based evaluation metrics: (i) Morphological Consistency F1-Score, which quantifies the consistency between morpheme sharing and token sharing, contributing to LLM training convergence, and (ii) Morphological Edit Distance, which measures alignment between morphemes and tokens concerning interpretability. Experiments on English, Russian, Hungarian, and Arabic across 300M and 1B parameter LLMs demonstrate that MorphBPE consistently reduces cross-entropy loss, accelerates convergence, and improves morphological alignment scores. Fully compatible with existing LLM pipelines, MorphBPE requires minimal modifications for integration. The MorphBPE codebase and tokenizer playground will be available at: https://github.com/llm-lab-org/MorphBPE and https://tokenizer.llm-lab.org

Dataset contamination, where evaluation datasets overlap with pre-training corpora, inflates performance metrics and undermines the reliability of model evaluations. Quantifying dataset contamination thus becomes essential to ensure that performance evaluations genuinely reflect a model's ability to generalize to unseen data, rather than relying on memorized examples. To address this problem, we propose Kernel Divergence Score (KDS), a novel method that quantifies dataset contamination by computing the divergence between the kernel similarity matrix of sample embeddings, before and after fine-tuning on the benchmark dataset. Leveraging the insight that fine-tuning affects unseen samples more significantly than seen ones, KDS provides a reliable measure of contamination. Through extensive experiments on controlled contamination scenarios, KDS demonstrates a near-perfect correlation with contamination levels and outperforms existing baselines. Additionally, we perform comprehensive ablation studies to analyze the impact of key design choices, providing deeper insights into the components and effectiveness of KDS. These ablations highlight the importance of leveraging fine-grained kernel-based information and confirm the reliability of the proposed framework across diverse datasets and settings.

Looped Transformers have shown exceptional neural algorithmic reasoning capability in simulating traditional graph algorithms, but their application to more complex structures like hypergraphs remains underexplored. Hypergraphs generalize graphs by modeling higher-order relationships among multiple entities, enabling richer representations but introducing significant computational challenges. In this work, we extend the Loop Transformer architecture's neural algorithmic reasoning capability to simulate hypergraph algorithms, addressing the gap between neural networks and combinatorial optimization over hypergraphs. Specifically, we propose a novel degradation mechanism for reducing hypergraphs to graph representations, enabling the simulation of graph-based algorithms, such as Dijkstra's shortest path. Furthermore, we introduce a hyperedge-aware encoding scheme to simulate hypergraph-specific algorithms, exemplified by Helly's algorithm. We establish theoretical guarantees for these simulations, demonstrating the feasibility of processing high-dimensional and combinatorial data using Loop Transformers. This work highlights the potential of Transformers as general-purpose algorithmic solvers for structured data.