Background: Manual extraction of pancreatic cystic lesion (PCL) features from radiology reports is labor-intensive, limiting large-scale studies needed to advance PCL research. Purpose: To develop and evaluate large language models (LLMs) that automatically extract PCL features from MRI/CT reports and assign risk categories based on guidelines. Materials and Methods: We curated a training dataset of 6,000 abdominal MRI/CT reports (2005-2024) from 5,134 patients that described PCLs. Labels were generated by GPT-4o using chain-of-thought (CoT) prompting to extract PCL and main pancreatic duct features. Two open-source LLMs were fine-tuned using QLoRA on GPT-4o-generated CoT data. Features were mapped to risk categories per institutional guideline based on the 2017 ACR White Paper. Evaluation was performed on 285 held-out human-annotated reports. Model outputs for 100 cases were independently reviewed by three radiologists. Feature extraction was evaluated using exact match accuracy, risk categorization with macro-averaged F1 score, and radiologist-model agreement with Fleiss' Kappa. Results: CoT fine-tuning improved feature extraction accuracy for LLaMA (80% to 97%) and DeepSeek (79% to 98%), matching GPT-4o (97%). Risk categorization F1 scores also improved (LLaMA: 0.95; DeepSeek: 0.94), closely matching GPT-4o (0.97), with no statistically significant differences. Radiologist inter-reader agreement was high (Fleiss' Kappa = 0.888) and showed no statistically significant difference with the addition of DeepSeek-FT-CoT (Fleiss' Kappa = 0.893) or GPT-CoT (Fleiss' Kappa = 0.897), indicating that both models achieved agreement levels on par with radiologists. Conclusion: Fine-tuned open-source LLMs with CoT supervision enable accurate, interpretable, and efficient phenotyping for large-scale PCL research, achieving performance comparable to GPT-4o.

Automated data visualization plays a crucial role in simplifying data interpretation, enhancing decision-making, and improving efficiency. While large language models (LLMs) have shown promise in generating visualizations from natural language, the absence of comprehensive benchmarks limits the rigorous evaluation of their capabilities. We introduce Text2Vis, a benchmark designed to assess text-to-visualization models, covering 20+ chart types and diverse data science queries, including trend analysis, correlation, outlier detection, and predictive analytics. It comprises 1,985 samples, each with a data table, natural language query, short answer, visualization code, and annotated charts. The queries involve complex reasoning, conversational turns, and dynamic data retrieval. We benchmark 11 open-source and closed-source models, revealing significant performance gaps, highlighting key challenges, and offering insights for future advancements. To close this gap, we propose the first cross-modal actor-critic agentic framework that jointly refines the textual answer and visualization code, increasing GPT-4o`s pass rate from 26% to 42% over the direct approach and improving chart quality. We also introduce an automated LLM-based evaluation framework that enables scalable assessment across thousands of samples without human annotation, measuring answer correctness, code execution success, visualization readability, and chart accuracy. We release Text2Vis at https://github.com/vis-nlp/Text2Vis.

Large language models (LLMs) often exhibit societal biases in their outputs, prompting ethical concerns regarding fairness and harm. In this work, we propose KLAAD (KL-Attention Alignment Debiasing), an attention-based debiasing framework that implicitly aligns attention distributions between stereotypical and anti-stereotypical sentence pairs without directly modifying model weights. KLAAD introduces a composite training objective combining Cross-Entropy, KL divergence, and Triplet losses, guiding the model to consistently attend across biased and unbiased contexts while preserving fluency and coherence. Experimental evaluation of KLAAD demonstrates improved bias mitigation on both the BBQ and BOLD benchmarks, with minimal impact on language modeling quality. The results indicate that attention-level alignment offers a principled solution for mitigating bias in generative language models.

We present MedARC's team solution to the Algonauts 2025 challenge. Our pipeline leveraged rich multimodal representations from various state-of-the-art pretrained models across video (V-JEPA2), speech (Whisper), text (Llama 3.2), vision-text (InternVL3), and vision-text-audio (Qwen2.5-Omni). These features extracted from the models were linearly projected to a latent space, temporally aligned to the fMRI time series, and finally mapped to cortical parcels through a lightweight encoder comprising a shared group head plus subject-specific residual heads. We trained hundreds of model variants across hyperparameter settings, validated them on held-out movies and assembled ensembles targeted to each parcel in each subject. Our final submission achieved a mean Pearson's correlation of 0.2085 on the test split of withheld out-of-distribution movies, placing our team in fourth place for the competition. We further discuss a last-minute optimization that would have raised us to second place. Our results highlight how combining features from models trained in different modalities, using a simple architecture consisting of shared-subject and single-subject components, and conducting comprehensive model selection and ensembling improves generalization of encoding models to novel movie stimuli. All code is available on GitHub.

Recent research leveraging large-scale pretrained diffusion models has demonstrated the potential of using diffusion features to establish semantic correspondences in images. Inspired by advancements in diffusion-based techniques, we propose a novel zero-shot method for refining point cloud registration algorithms. Our approach leverages correspondences derived from depth images to enhance point feature representations, eliminating the need for a dedicated training dataset. Specifically, we first project the point cloud into depth maps from multiple perspectives and extract implicit knowledge from a pretrained diffusion network as depth diffusion features. These features are then integrated with geometric features obtained from existing methods to establish more accurate correspondences between point clouds. By leveraging these refined correspondences, our approach achieves significantly improved registration accuracy. Extensive experiments demonstrate that our method not only enhances the performance of existing point cloud registration techniques but also exhibits robust generalization capabilities across diverse datasets. Codes are available at https://github.com/zhengcy-lambo/RARE.git.

--Automated Program Repair (APR) uses various tools and techniques to help developers achieve functional and error-free code faster . In recent years, Large Language Models (LLMs) have gained popularity as components in APR tool chains because of their performance and flexibility. However, training such models requires a significant amount of resources. Fine-tuning techniques have been developed to adapt pre-trained LLMs to specific tasks, such as APR, and enhance their performance at far lower computational costs than training from scratch. In this study, we empirically investigate the impact of various fine-tuning techniques on the performance of LLMs used for APR. Our experiments provide insights into the performance of a selection of state-of-the-art LLMs pre-trained on code. The evaluation is done on three popular APR benchmarks (i.e., QuixBugs, Defects4J and HumanEval-Java) and considers six different LLMs with varying parameter sizes (resp. We consider three training regimens: no fine-tuning, full fine-tuning, and parameter-efficient fine-tuning (PEFT) using LoRA and IA3. We observe that full fine-tuning techniques decrease the benchmarking performance of various models due to different data distributions and overfitting. By using parameter-efficient fine-tuning methods, we restrict models in the amount of trainable parameters and achieve better results. Index T erms --large language models, automated program repair, parameter-efficient fine-tuning, AI4Code, AI4SE, ML4SE. Software development, maintenance, and evolution are expensive processes, both in terms of money and time [1]. Supporting the efficiency of software engineers responsible for these workflows can save significant resources and enable companies to speed up the production and delivery of products without loss of quality. One of the key challenges that software engineers face is the occurrence of software defects, or bugs, which are unintended errors in the code that cause deviations from expected behavior. These defects vary in complexity, from simple one-line syntax errors to intricate multi-line logic bugs that can span multiple files and components. Automated Program Repair (APR) aims to support developers with the software maintenance and evolution process, by helping them to fix any bugs they encounter and achieve their goals faster.

--As large language models (LLMs) become increasingly embedded in software engineering workflows, a critical capability remains underexplored: generating correct code that enables cross-programming-language (CPL) interoperability. This skill is essential for building complex systems that integrate components written in multiple languages via mechanisms like inter-process communication (IPC). T o bridge this gap, we present CrossPL, the first benchmark designed to systematically evaluate LLMs' ability to generate CPL-interoperating code. CrossPL comprises 1,982 tasks centered around IPC, covering six widely-used programming languages and seven representative CPL techniques. We construct this benchmark by (i) analyzing 19,169 multi-language GitHub repositories using 156 hand-crafted finite state machines (FSMs), and (ii) developing an LLM-based pipeline that automatically extracts CPL code snippets, generates task instructions, and validates functional correctness. We evaluate 14 state-of-the-art general-purpose LLMs and 6 code-oriented LLMs released in the past three years on CrossPL via FSM-based validation. Results reveal that even the best-performing models struggle with CPL scenarios, underscoring the need for more targeted research in this space. Our benchmark and code are available at: https://anonymous.4open.science/r/crosspl-2814/. In software system development, the use of multiple programming languages (MPL) has become increasingly common, as it allows developers to exploit the unique strengths of different languages to improve performance, modularity, and scalability [1]-[5].

Software development is a complex, multi-phase process traditionally requiring collaboration among individuals with diverse expertise. We propose AgentMesh, a Python-based framework that uses multiple cooperating LLM-powered agents to automate software development tasks. In AgentMesh, specialized agents - a Planner, Coder, Debugger, and Reviewer - work in concert to transform a high-level requirement into fully realized code. The Planner agent first decomposes user requests into concrete subtasks; the Coder agent implements each subtask in code; the Debugger agent tests and fixes the code; and the Reviewer agent validates the final output for correctness and quality. We describe the architecture and design of these agents and their communication, and provide implementation details including prompt strategies and workflow orchestration. A case study illustrates AgentMesh handling a non-trivial development request via sequential task planning, code generation, iterative debugging, and final code review. We discuss how dividing responsibilities among cooperative agents leverages the strengths of large language models while mitigating single-agent limitations. Finally, we examine current limitations - such as error propagation and context scaling - and outline future work toward more robust, scalable multi-agent AI systems for software engineering automation.

Early detection of depression from online social media posts holds promise for providing timely mental health interventions. In this work, we present a high-quality, expert-annotated dataset of 1,017 social media posts labeled with depressive spans and mapped to 12 depression symptom categories. Unlike prior datasets that primarily offer coarse post-level labels \cite{cohan-etal-2018-smhd}, our dataset enables fine-grained evaluation of both model predictions and generated explanations. We develop an evaluation framework that leverages this clinically grounded dataset to assess the faithfulness and quality of natural language explanations generated by large language models (LLMs). Through carefully designed prompting strategies, including zero-shot and few-shot approaches with domain-adapted examples, we evaluate state-of-the-art proprietary LLMs including GPT-4.1, Gemini 2.5 Pro, and Claude 3.7 Sonnet. Our comprehensive empirical analysis reveals significant differences in how these models perform on clinical explanation tasks, with zero-shot and few-shot prompting. Our findings underscore the value of human expertise in guiding LLM behavior and offer a step toward safer, more transparent AI systems for psychological well-being.

Artificial intelligence (AI) has shown the potential to revolutionize healthcare by improving diagnostic accuracy, optimizing workflows, and personalizing treatment plans. Large Language Models (LLMs) and Multimodal Large Language Models (MLLMs) have achieved notable advancements in natural language processing and medical applications. However, the evaluation of these models has focused predominantly on the English language, leading to potential biases in their performance across different languages. This study investigates the capability of six LLMs (GPT-4.0 Turbo, LLaMA-3-8B, LLaMA-3-70B, Mixtral 8x7B Instruct, Titan Text G1-Express, and Command R+) and four MLLMs (Claude-3.5-Sonnet, Claude-3-Opus, Claude-3-Sonnet, and Claude-3-Haiku) to answer questions written in Brazilian spoken portuguese from the medical residency entrance exam of the Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo (HCFMUSP) - the largest health complex in South America. The performance of the models was benchmarked against human candidates, analyzing accuracy, processing time, and coherence of the generated explanations. The results show that while some models, particularly Claude-3.5-Sonnet and Claude-3-Opus, achieved accuracy levels comparable to human candidates, performance gaps persist, particularly in multimodal questions requiring image interpretation. Furthermore, the study highlights language disparities, emphasizing the need for further fine-tuning and data set augmentation for non-English medical AI applications. Our findings reinforce the importance of evaluating generative AI in various linguistic and clinical settings to ensure a fair and reliable deployment in healthcare. Future research should explore improved training methodologies, improved multimodal reasoning, and real-world clinical integration of AI-driven medical assistance.