Representation Of Examples
INDIGO: GNN-Based Inductive Knowledge Graph Completion Using Pair-Wise Encoding
The aim of knowledge graph (KG) completion is to extend an incomplete KG with missing triples. Popular approaches based on graph embeddings typically work by first representing the KG in a vector space, and then applying a predefined scoring function to the resulting vectors to complete the KG. These approaches work well in transductive settings, where predicted triples involve only constants seen during training; however, they are not applicable in inductive settings, where the KG on which the model was trained is extended with new constants or merged with other KGs. The use of Graph Neural Networks (GNNs) has recently been proposed as a way to overcome these limitations; however, existing approaches do not fully exploit the capabilities of GNNs and still rely on heuristics and adhoc scoring functions. In this paper, we propose a novel approach, where the KG is fully encoded into a GNN in a transparent way, and where the predicted triples can be read out directly from the last layer of the GNN without the need for additional components or scoring functions. Our experiments show that our model outperforms state-of-the-art approaches on inductive KG completion benchmarks.
A Hierarchical Sheaf Spectral Embedding Framework for Single-Cell RNA-seq Analysis
Wang, Xiang Xiang, We, Guo-Wei
Single-cell RNA-seq data analysis typically requires representations that capture heterogeneous local structure across multiple scales while remaining stable and interpretable. In this work, we propose a hierarchical sheaf spectral embedding (HSSE) framework that constructs informative cell-level features based on persistent sheaf Laplacian analysis. Starting from scale-dependent low-dimensional embeddings, we define cell-centered local neighborhoods at multiple resolutions. For each local neighborhood, we construct a data-driven cellular sheaf that encodes local relationships among cells. We then compute persistent sheaf Laplacians over sampled filtration intervals and extract spectral statistics that summarize the evolution of local relational structure across scales. These spectral descriptors are aggregated into a unified feature vector for each cell and can be directly used in downstream learning tasks without additional model training. We evaluate HSSE on twelve benchmark single-cell RNA-seq datasets covering diverse biological systems and data scales. Under a consistent classification protocol, HSSE achieves competitive or improved performance compared with existing multiscale and classical embedding-based methods across multiple evaluation metrics. The results demonstrate that sheaf spectral representations provide a robust and interpretable approach for single-cell RNA-seq data representation learning.
Active Nearest-Neighbor Learning in Metric Spaces
Aryeh Kontorovich, Sivan Sabato, Ruth Urner
We propose a pool-based non-parametric active learning algorithm for general metric spaces, called MArgin Regularized Metric Active Nearest Neighbor (MARMANN), which outputs a nearest-neighbor classifier. We give prediction error guarantees that depend on the noisy-margin properties of the input sample, and are competitive with those obtained by previously proposed passive learners. We prove that the label complexity of MARMANN is significantly lower than that of any passive learner with similar error guarantees. Our algorithm is based on a generalized sample compression scheme and a new label-efficient active model-selection procedure.