Using a Markov chain perspective of spectral clustering we present an algorithm to automatically find the number of stable clusters in a dataset. The Markov chain's behaviour is characterized by the spectral properties of the matrix of transition probabilities, from which we derive eigenflows along with their halflives. An eigenflow describes the flow of probability massdue to the Markov chain, and it is characterized by its eigenvalue, orequivalently, by the halflife of its decay as the Markov chain is iterated. A ideal stable cluster is one with zero eigenflow and infinite half-life.The key insight in this paper is that bottlenecks between weakly coupled clusters can be identified by computing the sensitivity of the eigenflow's halflife to variations in the edge weights. We propose a novel EIGENCUTS algorithm to perform clustering that removes these identified bottlenecks in an iterative fashion.

Inner-product operators, often referred to as kernels in statistical learning, define amapping from some input space into a feature space. The focus of this paper is the construction of biologically-motivated kernels for cortical activities. Thekernels we derive, termed Spikernels, map spike count sequences into an abstract vector space in which we can perform various prediction tasks. We discuss in detail the derivation of Spikernels and describe an efficient algorithm forcomputing their value on any two sequences of neural population spike counts. We demonstrate the merits of our modeling approach using the Spikernel and various standard kernels for the task of predicting hand movement velocitiesfrom cortical recordings. In all of our experiments all the kernels we tested outperform the standard scalar product used in regression with the Spikernel consistently achieving the best performance.

In this paper we show how the generation of documents can be thought of as a k-stage Markov process, which leads to a Fisher kernel fromwhich the n-gram and string kernels can be reconstructed. The Fisher kernel view gives a more flexible insight into the string kernel and suggests how it can be parametrised in a way that reflects thestatistics of the training corpus. Furthermore, the probabilistic modellingapproach suggests extending the Markov process to consider subsequences of varying length, rather than the standard fixed-length approach used in the string kernel. We give a procedure for determining which subsequences are informative features and hence generate a Finite State Machine model, which can again be used to obtain a Fisher kernel. By adjusting the parametrisation we can also influence the weighting received by the features. In this way we are able to obtain a logarithmic weighting in a Fisher kernel. Finally, experiments are reported comparing the different kernels using the standard Bag of Words kernel as a baseline.

We describe the RA scanner, a novel system for the examination of patients sufferingfrom rheumatoid arthritis. The RA scanner is based on a novel laser-based imaging technique which is sensitive to the optical characteristics of finger joint tissue. Based on the laser images, finger joints are classified according to whether the inflammatory status has improved or worsened. To perform the classification task, various linear andkernel-based systems were implemented and their performances were compared. Special emphasis was put on measures to reliably perform parametertuning and evaluation, since only a very small data set was available. Based on the results presented in this paper, it was concluded thatthe RA scanner permits a reliable classification of pathological finger joints, thus paving the way for a further development from prototype to product stage.

We introduce a novel learning algorithm for binary classification with hyperplane discriminants based on pairs of training points from opposite classes (dyadic hypercuts). This algorithm is further extended to nonlinear discriminants using kernel functions satisfying Mercer'sconditions. An ensemble of simple dyadic hypercuts is learned incrementally by means of a confidence-rated version of AdaBoost, whichprovides a sound strategy for searching through the finite set of hypercut hypotheses. In experiments with real-world datasets from the UCI repository, the generalization performance of the hypercut classifiers was found to be comparable to that of SVMs and k-NN classifiers. Furthermore, the computational cost of classification (at run time) was found to be similar to, or better than,that of SVM. Similarly to SVMs, boosted dyadic kernel discriminants tend to maximize the margin (via AdaBoost). In contrast to SVMs, however, we offer an online and incremental learning machine for building kernel discriminants whose complexity (numberof kernel evaluations) can be directly controlled (traded off for accuracy).

We discuss the problem of ranking k instances with the use of a "large margin" principle. We introduce two main approaches: the first is the "fixed margin" policy in which the margin of the closest neighboring classes is being maximized - which turns out to be a direct generalization ofSVM to ranking learning. The second approach allows for k - 1 different margins where the sum of margins is maximized. This approach is shown to reduce to lI-SVM when the number of classes k 2. Both approaches are optimal in size of 21 where I is the total number of training examples. Experiments performed on visual classification and "collaborative filtering"show that both approaches outperform existing ordinal regression algorithms applied for ranking and multi-class SVM applied to general multi-class classification. 1 Introduction In this paper we investigate the problem of inductive learning from the point of view of predicting variables of ordinal scale [3, 7,5], a setting referred to as ranking learning or ordinal regression. We consider the problem of applying the large margin principle used in Support Vector methods [12, 1] to the ordinal regression problem while maintaining an (optimal) problem size linear in the number of training examples.

Recently proposed algorithms for nonlinear dimensionality reduction fall broadly into two categories which have different advantages and disadvantages: global(Isomap [1]), and local (Locally Linear Embedding [2], Laplacian Eigenmaps [3]). We present two variants of Isomap which combine the advantages of the global approach with what have previously beenexclusive advantages of local methods: computational sparsity and the ability to invert conformal maps.

AdaBoost [3] minimizes an upper error bound which is an exponential function of the margin on the training set [14]. However, the ultimate goal in applications of pattern classification is always minimum error rate. On the other hand, AdaBoost needs an effective procedure for learning weak classifiers, which by itself is difficult especially for high dimensional data. In this paper, we present a novel procedure, called FloatBoost, for learning a better boosted classifier. FloatBoost uses a backtrack mechanism after each iteration of AdaBoost to remove weak classifiers which cause higher error rates. The resulting float-boosted classifier consists of fewer weak classifiers yet achieves lower error rates than AdaBoost in both training and test. We also propose a statistical model for learning weak classifiers, based on a stagewise approximation of the posterior using an overcomplete set of scalar features. Experimental comparisonsof FloatBoost and AdaBoost are provided through a difficult classification problem, face detection, where the goal is to learn from training examples a highly nonlinear classifier to differentiate between faceand nonface patterns in a high dimensional space. The results clearly demonstrate the promises made by FloatBoost over AdaBoost.

Classification with partially labeled data requires using a large number of unlabeled examples (or an estimated marginal P (x)), to further constrain theconditional P (y x) beyond a few available labeled examples. We formulate a regularization approach to linking the marginal and the conditional in a general way. The regularization penalty measures the information that is implied about the labels over covering regions. No parametric assumptions are required and the approach remains tractable even for continuous marginal densities P (x). We develop algorithms for solving the regularization problem for finite covers, establish a limiting differential equation, and exemplify the behavior of the new regularization approachin simple cases.

We describe a new algorithmic framework for learning multiclass categorization problems.In this framework a multiclass predictor is composed of a pair of embeddings that map both instances and labels into a common space. In this space each instance is assigned the label it is nearest to. We outline and analyze an algorithm, termed Bunching, for learning the pair of embeddings from labeled data. A key construction in the analysis of the algorithm is the notion of probabilistic output codes, a generalization oferror correcting output codes (ECOC). Furthermore, the method of multiclass categorization using ECOC is shown to be an instance of Bunching. We demonstrate the advantage of Bunching over ECOC by comparing their performance on numerous categorization problems.