We formulate the problem of graph inference where part of the graph is known as a supervised learning problem, and propose an algorithm to solve it. The method involves the learning of a mapping of the vertices to a Euclidean space where the graph is easy to infer, and can be formulated as an optimization problem in a reproducing kernel Hilbert space. We report encouraging results on the problem of metabolic network reconstruction from genomic data.

We describe a framework for learning an object classifier from a single example. This goal is achieved by emphasizing the relevant dimensions for classification using available examples of related classes. Learning to accurately classify objects from a single training example is often unfeasible due to overfitting effects. However, if the instance representation provides that the distance between each two instances of the same class is smaller than the distance between any two instances from different classes, then a nearest neighbor classifier could achieve perfect performance with a single training example. We therefore suggest a two stage strategy.

We devise and experiment with a dynamical kernel-based system for tracking hand movements from neural activity. The state of the system corresponds to the hand location, velocity, and acceleration, while the system's input are the instantaneous spike rates. The system's state dynamics is defined as a combination of a linear mapping from the previous estimated state and a kernel-based mapping tailored for modeling neural activities. In contrast to generative models, the activity-to-state mapping is learned using discriminative methods by minimizing a noise-robust loss function. We use this approach to predict hand trajectories on the basis of neural activity in motor cortex of behaving monkeys and find that the proposed approach is more accurate than both a static approach based on support vector regression and the Kalman filter.

Capturing dependencies in images in an unsupervised manner is important for many image processing applications. We propose a new method for capturing nonlinear dependencies in images of natural scenes. This method is an extension of the linear Independent Component Analysis (ICA) method by building a hierarchical model based on ICA and mixture of Laplacian distribution. The model parameters are learned via an EM algorithm and it can accurately capture variance correlation and other high order structures in a simple manner. We visualize the learned variance structure and demonstrate applications to image segmentation and denoising.

We present an algorithm based on convex optimization for constructing kernels for semi-supervised learning. The kernel matrices are derived from the spectral decomposition of graph Laplacians, and combine labeled and unlabeled data in a systematic fashion. Unlike previous work using diffusion kernels and Gaussian random field kernels, a nonparametric kernel approach is presented that incorporates order constraints during optimization. This results in flexible kernels and avoids the need to choose among different parametric forms. Our approach relies on a quadratically constrained quadratic program (QCQP), and is computationally feasible for large datasets. We evaluate the kernels on real datasets using support vector machines, with encouraging results.

We provide a worst-case analysis of selective sampling algorithms for learning linear threshold functions. The algorithms considered in this paper are Perceptron-like algorithms, i.e., algorithms which can be efficiently run in any reproducing kernel Hilbert space. Our algorithms exploit a simple margin-based randomized rule to decide whether to query the current label. We obtain selective sampling algorithms achieving on average the same bounds as those proven for their deterministic counterparts, but using much fewer labels. We complement our theoretical findings with an empirical comparison on two text categorization tasks. The outcome of these experiments is largely predicted by our theoretical results: Our selective sampling algorithms tend to perform as good as the algorithms receiving the true label after each classification, while observing in practice substantially fewer labels.

This paper concerns approximate nearest neighbor searching algorithms, which have become increasingly important, especially in high dimensional perception areas such as computer vision, with dozens of publications in recent years. Much of this enthusiasm is due to a successful new approximate nearest neighbor approach called Locality Sensitive Hashing (LSH). In this paper we ask the question: can earlier spatial data structure approaches to exact nearest neighbor, such as metric trees, be altered to provide approximate answers to proximity queries and if so, how? We introduce a new kind of metric tree that allows overlap: certain datapoints may appear in both the children of a parent. We also introduce new approximate k-NN search algorithms on this structure. We show why these structures should be able to exploit the same randomprojection-based approximations that LSH enjoys, but with a simpler algorithm and perhaps with greater efficiency. We then provide a detailed empirical evaluation on five large, high dimensional datasets which show up to 31-fold accelerations over LSH. This result holds true throughout the spectrum of approximation levels.

The standard approach to the classification of objects is to consider the examples as independent and identically distributed (iid). In many real world settings, however, this assumption is not valid, because a topographical relationship exists between the objects. In this contribution we consider the special case of image segmentation, where the objects are pixels and where the underlying topography is a 2D regular rectangular grid. We introduce a classification method which not only uses measured vectorial feature information but also the label configuration within a topographic neighborhood. Due to the resulting dependence between the labels of neighboring pixels, a collective classification of a set of pixels becomes necessary. We propose a new method called'Topographic Support Vector Machine' (TSVM), which is based on a topographic kernel and a self-consistent solution to the label assignment shown to be equivalent to a recurrent neural network. The performance of the algorithm is compared to a conventional SVM on a cell image segmentation task.

In this paper we show that it is possible to model sensory impressions of consumers about beef meat. This is not a straightforward task; the reason is that when we are aiming to induce a function that maps object descriptions into ratings, we must consider that consumers' ratings are just a way to express their preferences about the products presented in the same testing session. Therefore, we had to use a special purpose SVM polynomial kernel. The training data set used collects the ratings of panels of experts and consumers; the meat was provided by 103 bovines of 7 Spanish breeds with different carcass weights and aging periods. Additionally, to gain insight into consumer preferences, we used feature subset selection tools. The result is that aging is the most important trait for improving consumers' appreciation of beef meat.

The problem of learning a sparse conic combination of kernel functions or kernel matrices for classification or regression can be achieved via the regularization by a block 1-norm [1]. In this paper, we present an algorithm that computes the entire regularization path for these problems. The path is obtained by using numerical continuation techniques, and involves a running time complexity that is a constant times the complexity of solving the problem for one value of the regularization parameter. Working in the setting of kernel linear regression and kernel logistic regression, we show empirically that the effect of the block 1-norm regularization differs notably from the (non-block) 1-norm regularization commonly used for variable selection, and that the regularization path is of particular value in the block case.