Statistical Learning
Generalization in Clustering with Unobserved Features
We argue that when objects are characterized by many attributes, clustering themon the basis of a relatively small random subset of these attributes can capture information on the unobserved attributes as well. Moreover, we show that under mild technical conditions, clustering the objects on the basis of such a random subset performs almost as well as clustering with the full attribute set. We prove a finite sample generalization theoremsfor this novel learning scheme that extends analogous results from the supervised learning setting. The scheme is demonstrated for collaborative filtering of users with movies rating as attributes.
Kernels for gene regulatory regions
Vert, Jean-philippe, Thurman, Robert, Noble, William S.
We describe a hierarchy of motif-based kernels for multiple alignments of biological sequences, particularly suitable to process regulatory regions ofgenes. The kernels incorporate progressively more information, with the most complex kernel accounting for a multiple alignment of orthologous regions, the phylogenetic tree relating the species, and the prior knowledge that relevant sequence patterns occur in conserved motif blocks.These kernels can be used in the presence of a library of known transcription factor binding sites, or de novo by iterating over all k-mers of a given length. In the latter mode, a discriminative classifier builtfrom such a kernel not only recognizes a given class of promoter regions,but as a side effect simultaneously identifies a collection of relevant, discriminative sequence motifs. We demonstrate the utility of the motif-based multiple alignment kernels by using a collection ofaligned promoter regions from five yeast species to recognize classes of cell-cycle regulated genes.
Benchmarking Non-Parametric Statistical Tests
Keller, Mikaela, Bengio, Samy, Wong, Siew Y.
Although nonparametric tests have already been proposed for that purpose, statisticalsignificance tests for nonstandard measures (different from the classification error) are less often used in the literature. This paper is an attempt at empirically verifying how these tests compare with more classical tests, on various conditions. More precisely, using a very large dataset to estimate the whole "population", we analyzed the behavior ofseveral statistical test, varying the class unbalance, the compared models, the performance measure, and the sample size. The main result isthat providing big enough evaluation sets nonparametric tests are relatively reliable in all conditions.
Convex Neural Networks
Bengio, Yoshua, Roux, Nicolas L., Vincent, Pascal, Delalleau, Olivier, Marcotte, Patrice
Convexity has recently received a lot of attention in the machine learning community, and the lack of convexity has been seen as a major disadvantage ofmany learning algorithms, such as multi-layer artificial neural networks. We show that training multi-layer neural networks in which the number of hidden units is learned can be viewed as a convex optimization problem. This problem involves an infinite number of variables, but can be solved by incrementally inserting a hidden unit at a time, each time finding a linear classifier that minimizes a weighted sum of errors.
Active Learning For Identifying Function Threshold Boundaries
Bryan, Brent, Nichol, Robert C., Genovese, Christopher R., Schneider, Jeff, Miller, Christopher J., Wasserman, Larry
We present an efficient algorithm to actively select queries for learning the boundaries separating a function domain into regions where the function isabove and below a given threshold. We develop experiment selection methodsbased on entropy, misclassification rate, variance, and their combinations, and show how they perform on a number of data sets. We then show how these algorithms are used to determine simultaneously valid 1 α confidence intervals for seven cosmological parameters. Experimentation showsthat the algorithm reduces the computation necessary for the parameter estimation problem by an order of magnitude.
Hierarchical Linear/Constant Time SLAM Using Particle Filters for Dense Maps
Eliazar, Austin I., Parr, Ronald
We present an improvement to the DP-SLAM algorithm for simultaneous localizationand mapping (SLAM) that maintains multiple hypotheses about densely populated maps (one full map per particle in a particle filter)in time that is linear in all significant algorithm parameters and takes constant (amortized) time per iteration. This means that the asymptotic complexity of the algorithm is no greater than that of a pure localization algorithm using a single map and the same number of particles. Wealso present a hierarchical extension of DP-SLAM that uses a two level particle filter which models drift in the particle filtering process itself. The hierarchical approach enables recovery from the inevitable drift that results from using a finite number of particles in a particle filter and permits the use of DP-SLAM in more challenging domains, while maintaining linear time asymptotic complexity.
Convergence and Consistency of Regularized Boosting Algorithms with Stationary B-Mixing Observations
Lozano, Aurelie C., Kulkarni, Sanjeev R., Schapire, Robert E.
We study the statistical convergence and consistency of regularized Boosting methods, where the samples are not independent and identically distributed(i.i.d.) but come from empirical processes of stationary β-mixing sequences. Utilizing a technique that constructs a sequence of independent blocks close in distribution to the original samples, we prove the consistency of the composite classifiers resulting from a regularization achievedby restricting the 1-norm of the base classifiers' weights. When compared to the i.i.d.
A Probabilistic Interpretation of SVMs with an Application to Unbalanced Classification
Grandvalet, Yves, Mariethoz, Johnny, Bengio, Samy
In this paper, we show that the hinge loss can be interpreted as the neg-log-likelihood of a semi-parametric model of posterior probabilities. From this point of view, SVMs represent the parametric component of a semi-parametric model fitted by a maximum a posteriori estimation procedure. Thisconnection enables to derive a mapping from SVM scores to estimated posterior probabilities. Unlike previous proposals, the suggested mappingis interval-valued, providing a set of posterior probabilities compatible with each SVM score. This framework offers a new way to adapt the SVM optimization problem to unbalanced classification, whendecisions result in unequal (asymmetric) losses. Experiments show improvements over state-of-the-art procedures.