We propose a generic algorithm for computation of similarity measures for sequential data. The algorithm uses generalized suffix trees for efficient calculation of various kernel, distance and non-metric similarity functions. Its worst-case run-time is linear in the length of sequences and independent of the underlying embedding language, which can cover words, k-grams or all contained subsequences. Experiments with network intrusion detection, DNA analysis and text processing applications demonstrate the utility of distances and similarity coefficients for sequences as alternatives to classical kernel functions.

We introduce binary matrix factorization, a novel model for unsupervised matrix decomposition. The decomposition is learned by fitting a nonparametric Bayesian probabilistic model with binary latent variables to a matrix of dyadic data. Unlike bi-clustering models, which assign each row or column to a single cluster based on a categorical hidden feature, our binary feature model reflects the prior belief that items and attributes can be associated with more than one latent cluster at a time. We provide simple learning and inference rules for this new model and show how to extend it to an infinite model in which the number of features is not a priori fixed but is allowed to grow with the size of the data.

We examine the problem of predicting local sentiment flow in documents, and its application to several areas of text analysis. Formally, the problem is stated as predicting an ordinal sequence based on a sequence of word sets. In the spirit of isotonic regression, we develop a variant of conditional random fields that is wellsuited to handle this problem. Using the Möbius transform, we express the model as a simple convex optimization problem. Experiments demonstrate the model and its applications to sentiment prediction, style analysis, and text summarization.

We establish a general oracle inequality for clipped approximate minimizers of regularized empirical risks and apply this inequality to support vector machine (SVM) type algorithms. We then show that for SVMs using Gaussian RBF kernels for classification this oracle inequality leads to learning rates that are faster than the ones established in [9]. Finally, we use our oracle inequality to show that a simple parameter selection approach based on a validation set can yield the same fast learning rates without knowing the noise exponents which were required to be known a-priori in [9].

In this paper, we present a subspace method for learning nonlinear dynamical systems based on stochastic realization, in which state vectors are chosen using kernel canonical correlation analysis, and then state-space systems are identified through regression with the state vectors. We construct the theoretical underpinning and derive a concrete algorithm for nonlinear identification. The obtained algorithm needs no iterative optimization procedure and can be implemented on the basis of fast and reliable numerical schemes. The simulation result shows that our algorithm can express dynamics with a high degree of accuracy.

The additive clustering model is widely used to infer the features of a set of stimuli from their similarities, on the assumption that similarity is a weighted linear function of common features. This paper develops a fully Bayesian formulation of the additive clustering model, using methods from nonparametric Bayesian statistics to allow the number of features to vary. We use this to explore several approaches to parameter estimation, showing that the nonparametric Bayesian approach provides a straightforward way to obtain estimates of both the number of features used in producing similarity judgments and their importance.

The presented denoising algorithm is based on a graph-based diffusion process of the point sample. We analyze this diffusion process using recent results about the convergence of graph Laplacians. In the experiments we show that our method is capable of dealing with nontrivial high-dimensional noise. Moreover using the denoising algorithm as pre-processing method we can improve the results of a semi-supervised learning algorithm.

We consider the problem of training a conditional random field (CRF) to maximize per-label predictive accuracy on a training set, an approach motivated by the principle of empirical risk minimization. We give a gradient-based procedure for minimizing an arbitrarily accurate approximation of the empirical risk under a Hamming loss function. In experiments with both simulated and real data, our optimization procedure gives significantly better testing performance than several current approaches for CRF training, especially in situations of high label noise.

Image Congealing (IC) is a nonparametric method for the joint alignment of a collection of images affected by systematic and unwanted deformations. The method attempts to undo the deformations by minimizing a measure of complexity of the image ensemble, such as the averaged per-pixel entropy. This enables alignment without an explicit model of the aligned dataset as required by other methods (e.g.

Kernel-based regularized learning seeks a model in a hypothesis space by minimizing the empirical error and the model's complexity. Based on the representer theorem, the solution consists of a linear combination of translates of a kernel. This paper investigates a generalized form of representer theorem for kernel-based learning. After mapping predefined features and translates of a kernel simultaneously onto a hypothesis space by a specific way of constructing kernels, we proposed a new algorithm by utilizing a generalized regularizer which leaves part of the space unregularized. Using a squared-loss function in calculating the empirical error, a simple convex solution is obtained which combines predefined features with translates of the kernel. Empirical evaluations have confirmed the effectiveness of the algorithm for supervised learning tasks.