We propose a novel method for {\em linear} dimensionality reduction of manifold modeled data. First, we show that with a small number $M$ of {\em random projections} of sample points in $\reals^N$ belonging to an unknown $K$-dimensional Euclidean manifold, the intrinsic dimension (ID) of the sample set can be estimated to high accuracy. Second, we rigorously prove that using only this set of random projections, we can estimate the structure of the underlying manifold. In both cases, the number random projections required is linear in $K$ and logarithmic in $N$, meaning that $K

We study boosting in the filtering setting, where the booster draws examples from an oracle instead of using a fixed training set and so may train efficiently on very large datasets. Our algorithm, which is based on a logistic regression technique proposed by Collins, Schapire, & Singer, requires fewer assumptions to achieve bounds equivalent to or better than previous work. Moreover, we give the first proof that the algorithm of Collins et al. is a strong PAC learner, albeit within the filtering setting. Our proofs demonstrate the algorithm's strong theoretical properties forboth classification and conditional probability estimation, and we validate these results through extensive experiments. Empirically, our algorithm proves more robust to noise and overfitting than batch boosters in conditional probability estimation and proves competitive in classification.

In this paper, we propose a method for support vector machine classification using indefinite kernels. Instead of directly minimizing or stabilizing a nonconvex loss function, our method simultaneously finds the support vectors and a proxy kernel matrix used in computing the loss. This can be interpreted as a robust classification problem where the indefinite kernel matrix is treated as a noisy observation of the true positive semidefinite kernel. Our formulation keeps the problem convex and relatively large problems can be solved efficiently using the analytic center cutting plane method. We compare the performance of our technique with other methods on several data sets.

In bioinformatics it is often desirable to combine data from various measurement sources and thus structured feature vectors are to be analyzed that possess different intrinsic blocking characteristics (e.g., different patterns of missing values, observation noiselevels, effective intrinsic dimensionalities). We propose a new machine learning tool, heterogeneous component analysis (HCA), for feature extraction in order to better understand the factors that underlie such complex structured heterogeneous data. HCA is a linear block-wise sparse Bayesian PCA based not only on a probabilistic model with block-wise residual variance terms but also on a Bayesian treatment of a block-wise sparse factor-loading matrix. We study various algorithmsthat implement our HCA concept extracting sparse heterogeneous structure by obtaining common components for the blocks and specific components withineach block. Simulations on toy and bioinformatics data underline the usefulness of the proposed structured matrix factorization concept.

Many algorithms have been recently developed for reducing dimensionality by projecting data onto an intrinsic nonlinear manifold.

Statistical tests of independence have been associated with a broad variety of dependence measures. Classical tests such as Spearman's,0 and Kendall's 7' are widely applied, however they are not

We present a simple variant of the k-d tree which automatically adapts to intrinsic low dimensional structure in data.

A new algorithm for on-line learning linear-threshold functions is proposed which efficiently combines second-order statistics about the data with the logarithmic behavior" of multiplicative/dual-norm algorithms. An initial theoretical analysis is provided suggesting that our algorithm might be viewed as a standard Perceptron algorithm operating on a transformed sequence of examples with improved margin properties. We also report on experiments carried out on datasets from diverse domains, with the goal of comparing to known Perceptron algorithms (first-order, second-order, additive, multiplicative). Our learning procedure seems to generalize quite well, and converges faster than the corresponding multiplicative baseline algorithms."

Empirical risk minimization offers well-known learning guarantees when training and test data come from the same domain. In the real world, though, we often wish to adapt a classifier from a source domain with a large amount of training data to different target domain with very little training data. In this work we give uniform convergence bounds for algorithms that minimize a convex combination of source and target empirical risk. The bounds explicitly model the inherent trade-off between training on a large but inaccurate source data set and a small but accurate target training set. Our theory also gives results when we have multiple source domains, each of which may have a different number of instances, and we exhibit cases in which minimizing a non-uniform combination of source risks can achieve much lower target error than standard empirical risk minimization.

Statistical models on full and partial rankings of n items are often of limited practical usefor large n due to computational consideration. We explore the use of nonparametric models for partially ranked data and derive efficient procedures for their use for large n. The derivations are largely possible through combinatorial and algebraic manipulations based on the lattice of partial rankings. In particular, we demonstrate for the first time a nonparametric coherent and consistent model capable of efficiently aggregating partially ranked data of different types.