In previous work we presented an efficient approach to computing kernel summations which arise in many machine learning methods such as kernel density estimation.

Fusing multiple information sources can yield significant benefits to successfully accomplish learning tasks. Many studies have focussed on fusing information in supervised learning contexts. We present an approach to utilize multiple information sources in the form of similarity data for unsupervised learning. Based on similarity information, the clustering task is phrased as a nonnegative matrix factorization problem of a mixture of similarity measurements. The tradeoff between the informativeness of data sources and the sparseness of their mixture is controlled by an entropy-based weighting mechanism. For the purpose of model selection, a stability-based approach is employed to ensure the selection of the most self-consistent hypothesis. The experiments demonstrate the performance of the method on toy as well as real world data sets.

We present a method for nonparametric regression that performs bandwidth selection and variable selection simultaneously. The approach is based on the technique of incrementally decreasing the bandwidth in directions where the gradient of the estimator with respect to bandwidth is large. When the unknown function satisfies a sparsity condition, our approach avoids the curse of dimensionality, achieving the optimal minimax rate of convergence, up to logarithmic factors, as if the relevant variables were known in advance. The method--called rodeo (regularization of derivative expectation operator)--conducts a sequence of hypothesis tests, and is easy to implement. A modified version that replaces hard with soft thresholding effectively solves a sequence of lasso problems.

Gaussian processes are attractive models for probabilistic classification but unfortunately exact inference is analytically intractable. We compare Laplace's method and Expectation Propagation (EP) focusing on marginal likelihood estimates and predictive performance. We explain theoretically and corroborate empirically that EP is superior to Laplace. We also compare to a sophisticated MCMC scheme and show that EP is surprisingly accurate. In recent years models based on Gaussian process (GP) priors have attracted much attention in the machine learning community.

We argue that when objects are characterized by many attributes, clustering them on the basis of a relatively small random subset of these attributes can capture information on the unobserved attributes as well. Moreover, we show that under mild technical conditions, clustering the objects on the basis of such a random subset performs almost as well as clustering with the full attribute set. We prove a finite sample generalization theorems for this novel learning scheme that extends analogous results from the supervised learning setting. The scheme is demonstrated for collaborative filtering of users with movies rating as attributes.

This activity often manifests itself as dynamically coordinated sequences of action potentials. Since multiple electrode recordings are now a standard tool in neuroscience research, it is important to have a measure of such network-wide behavioral coordination and information sharing, applicable to multiple neural spike train data. We propose a new statistic, informational coherence, which measures how much better one unit can be predicted by knowing the dynamical state of another. We argue informational coherence is a measure of association and shared information which is superior to traditional pairwise measures of synchronization and correlation. To find the dynamical states, we use a recently-introduced algorithm which reconstructs effective state spaces from stochastic time series.

Fisher linear discriminant analysis (LDA) can be sensitive to the problem data. Robust Fisher LDA can systematically alleviate the sensitivity problem by explicitly incorporating a model of data uncertainty in a classification problem and optimizing for the worst-case scenario under this model. The main contribution of this paper is show that with general convex uncertainty models on the problem data, robust Fisher LDA can be carried out using convex optimization. For a certain type of product form uncertainty model, robust Fisher LDA can be carried out at a cost comparable to standard Fisher LDA. The method is demonstrated with some numerical examples. Finally, we show how to extend these results to robust kernel Fisher discriminant analysis, i.e., robust Fisher LDA in a high dimensional feature space.

Although nonparametric tests have already been proposed for that purpose, statistical significance tests for nonstandard measures (different from the classification error) are less often used in the literature. This paper is an attempt at empirically verifying how these tests compare with more classical tests, on various conditions. More precisely, using a very large dataset to estimate the whole "population", we analyzed the behavior of several statistical test, varying the class unbalance, the compared models, the performance measure, and the sample size. The main result is that providing big enough evaluation sets nonparametric tests are relatively reliable in all conditions.

In this paper we propose a new basis selection criterion for building sparse GP regression models that provides promising gains in accuracy as well as efficiency over previous methods. Our algorithm is much faster than that of Smola and Bartlett, while, in generalization it greatly outperforms the information gain approach proposed by Seeger et al, especially on the quality of predictive distributions.

There have been many graph-based approaches for semi-supervised classification. One problem is that of hyperparameter learning: performance depends greatly on the hyperparameters of the similarity graph, transformation of the graph Laplacian and the noise model. We present a Bayesian framework for learning hyperparameters for graph-based semisupervised classification. Given some labeled data, which can contain inaccurate labels, we pose the semi-supervised classification as an inference problem over the unknown labels. Expectation Propagation is used for approximate inference and the mean of the posterior is used for classification. The hyperparameters are learned using EM for evidence maximization. We also show that the posterior mean can be written in terms of the kernel matrix, providing a Bayesian classifier to classify new points. Tests on synthetic and real datasets show cases where there are significant improvements in performance over the existing approaches.