Sparse estimation methods are aimed at using or obtaining parsimonious representations of data or models. While naturally cast as a combinatorial optimization problem, variable or feature selection admits a convex relaxation through the regularization by the $\ell_1$-norm. In this paper, we consider situations where we are not only interested in sparsity, but where some structural prior knowledge is available as well. We show that the $\ell_1$-norm can then be extended to structured norms built on either disjoint or overlapping groups of variables, leading to a flexible framework that can deal with various structures. We present applications to unsupervised learning, for structured sparse principal component analysis and hierarchical dictionary learning, and to supervised learning in the context of non-linear variable selection.

Today, one's disposes of large datasets composed of thousands of geographic objects. However, for many processes, which require the appraisal of an expert or much computational time, only a small part of these objects can be taken into account. In this context, robust sampling methods become necessary. In this paper, we propose a sampling method based on clustering techniques. Our method consists in dividing the objects in clusters, then in selecting in each cluster, the most representative objects. A case-study in the context of a process dedicated to knowledge revision for geographic data generalisation is presented. This case-study shows that our method allows to select relevant samples of objects.

This paper introduces a privacy-aware Bayesian approach that combines ensembles of classifiers and clusterers to perform semi-supervised and transductive learning. We consider scenarios where instances and their classification/clustering results are distributed across different data sites and have sharing restrictions. As a special case, the privacy aware computation of the model when instances of the target data are distributed across different data sites, is also discussed. Experimental results show that the proposed approach can provide good classification accuracies while adhering to the data/model sharing constraints.

We present the discrete infinite logistic normal distribution (DILN), a Bayesian nonparametric prior for mixed membership models. DILN is a generalization of the hierarchical Dirichlet process (HDP) that models correlation structure between the weights of the atoms at the group level. We derive a representation of DILN as a normalized collection of gamma-distributed random variables, and study its statistical properties. We consider applications to topic modeling and derive a variational inference algorithm for approximate posterior inference. We study the empirical performance of the DILN topic model on four corpora, comparing performance with the HDP and the correlated topic model (CTM). To deal with large-scale data sets, we also develop an online inference algorithm for DILN and compare with online HDP and online LDA on the Nature magazine, which contains approximately 350,000 articles.

Statistical data analysis and learning in Riemannian orbifolds is motivated by applications, where the data we want to learn on are naturally represented by finite combinatorial structures such as point patterns, trees, and graphs. Examples from structural pattern recognition that learn on structured data include estimating central points of a distribution on graphs such as the mean and median [9, 16, 15, 21], central clustering of graphs [10, 12, 13, 14, 19, 15, 23], learning graph quantization [17], and multilayer perceptrons for graphs [20]. In retrospect, the structure space framework proposed by [18] theoretically justifies the above approaches in the sense that they actually minimize an empirical risk function on structures. Since minimizing an empirical risk function is usually computationally intractable, the ultimate challenge consists in constructing efficient algorithms which are capable to return optimal or at least suboptimal solutions. From the point of view of statistical pattern recognition, however, the ultimate goal is not to determine a good solution of an empirical risk function, but rather to discover the true but unknown structure of the data with respect to its distribution.

In this paper we propose a novel framework for the construction of sparsity-inducing priors. In particular, we define such priors as a mixture of exponential power distributions with a generalized inverse Gaussian density (EP-GIG). EP-GIG is a variant of generalized hyperbolic distributions, and the special cases include Gaussian scale mixtures and Laplace scale mixtures. Furthermore, Laplace scale mixtures can subserve a Bayesian framework for sparse learning with nonconvex penalization. The densities of EP-GIG can be explicitly expressed. Moreover, the corresponding posterior distribution also follows a generalized inverse Gaussian distribution. These properties lead us to EM algorithms for Bayesian sparse learning. We show that these algorithms bear an interesting resemblance to iteratively re-weighted $\ell_2$ or $\ell_1$ methods. In addition, we present two extensions for grouped variable selection and logistic regression.

Department of Statistics, Rice University Abstract High-dimensional data common in genomics, proteomics, and chemometrics often contains complicated correlation structures. Recently, partial least squares (PLS) and Sparse PLS methods have gained attention in these areas as dimension reduction techniques in the context of supervised data analysis. We introduce a framework for Regularized PLS by solving a relaxation of the SIMPLS optimization problem with penalties on the PLS loadings vectors. Our approach enjoys many advantages including flexibility, general penalties, easy interpretation of results, and fast computation in high-dimensional settings. We also outline extensions of our methods leading to novel methods for Nonnegative PLS and Generalized PLS, an adaption of PLS for structured data. We demonstrate the utility of our methods through simulations and a case study on proton Nuclear Magnetic Resonance (NMR) spectroscopy data. To whom correspondence should be addressed; Department of Statistics, Rice University, MS 138, 6100 Main St., Houston, TX 77005 (email: gallen@rice.edu) 1 Introduction Technologies to measure high-throughput biomedical data in proteomics, chemometrics, and genomics have led to a proliferation of high-dimensional data that pose many statistical challenges. As genes, proteins, and metabolites, are biologically interconnected, the variables in these data sets are often highly correlated. In this context, several have recently advocated using partial least squares (PLS) for dimension reduction of supervised data, or data with a response or labels (Nguyen and Rocke, 2002b; Boulesteix and Strimmer, 2007; Rossouw et al., 2008; Chun and Keleş, 2010). First introduced by Wold (1966) as a regression method that uses least squares on a set of derived inputs accounting for multi-colinearities, others have since proposed alternative methods for PLS with multiple responses (de Jong, 1993) and for classification (Marx, 1996; Barker and Rayens, 2003).

In distributed learning, the goal is to perform a learning task over data distributed across multiple nodes with minimal (expensive) communication. Prior work (Daume III et al., 2012) proposes a general model that bounds the communication required for learning classifiers while allowing for $\eps$ training error on linearly separable data adversarially distributed across nodes. In this work, we develop key improvements and extensions to this basic model. Our first result is a two-party multiplicative-weight-update based protocol that uses $O(d^2 \log{1/\eps})$ words of communication to classify distributed data in arbitrary dimension $d$, $\eps$-optimally. This readily extends to classification over $k$ nodes with $O(kd^2 \log{1/\eps})$ words of communication. Our proposed protocol is simple to implement and is considerably more efficient than baselines compared, as demonstrated by our empirical results. In addition, we illustrate general algorithm design paradigms for doing efficient learning over distributed data. We show how to solve fixed-dimensional and high dimensional linear programming efficiently in a distributed setting where constraints may be distributed across nodes. Since many learning problems can be viewed as convex optimization problems where constraints are generated by individual points, this models many typical distributed learning scenarios. Our techniques make use of a novel connection from multipass streaming, as well as adapting the multiplicative-weight-update framework more generally to a distributed setting. As a consequence, our methods extend to the wide range of problems solvable using these techniques.

Kernel methods are among the most popular techniques in machine learning. From a frequentist/discriminative perspective they play a central role in regularization theory as they provide a natural choice for the hypotheses space and the regularization functional through the notion of reproducing kernel Hilbert spaces. From a Bayesian/generative perspective they are the key in the context of Gaussian processes, where the kernel function is also known as the covariance function. Traditionally, kernel methods have been used in supervised learning problem with scalar outputs and indeed there has been a considerable amount of work devoted to designing and learning kernels. More recently there has been an increasing interest in methods that deal with multiple outputs, motivated partly by frameworks like multitask learning. In this paper, we review different methods to design or learn valid kernel functions for multiple outputs, paying particular attention to the connection between probabilistic and functional methods.

We suggest using the max-norm as a convex surrogate constraint for clustering. We show how this yields a better exact cluster recovery guarantee than previously suggested nuclear-norm relaxation, and study the effectiveness of our method, and other related convex relaxations, compared to other clustering approaches.