We formulate clustering aggregation as a special instance of Maximum-Weight Independent Set (MWIS) problem. For a given dataset, an attributed graph is constructed from the union of the input clusterings generated by different underlying clustering algorithms with different parameters. The vertices, which represent the distinct clusters, are weighted by an internal index measuring both cohesion and separation. The edges connect the vertices whose corresponding clusters overlap. Intuitively, an optimal aggregated clustering can be obtained by selecting an optimal subset of non-overlapping clusters partitioning the dataset together. We formalize this intuition as the MWIS problem on the attributed graph, i.e., finding the heaviest subset of mutually non-adjacent vertices. This MWIS problem exhibits a special structure. Since the clusters of each input clustering form a partition of the dataset, the vertices corresponding to each clustering form a maximal independent set (MIS) in the attributed graph. We propose a variant of simulated annealing method that takes advantage of this special structure. Our algorithm starts from each MIS, which is close to a distinct local optimum of the MWIS problem, and utilizes a local search heuristic to explore its neighborhood in order to find the MWIS. Extensive experiments on many challenging datasets show that: 1. our approach to clustering aggregation automatically decides the optimal number of clusters; 2. it does not require any parameter tuning for the underlying clustering algorithms; 3. it can combine the advantages of different underlying clustering algorithms to achieve superior performance; 4. it is robust against moderate or even bad input clusterings.

W e propose a multiresolution Gaussian process to capture lo ng-range, non-Markovian dependencies while allowing for abrupt changes a nd non-stationarity. The multiresolution GP hierarchically couples a collectio n of smooth GPs, each defined over an element of a random nested partition. Long-ra nge dependencies are captured by the top-level GP while the partition poi nts define the abrupt changes. Due to the inherent conjugacy of the GPs, one can analytically marginalize the GPs and compute the marginal likelihood of the observations given the partition tree. This property allows for efficient inference of the partition itself, for which we employ graph-theoretic techniques. W e apply the multiresolution GP to the analysis of magnetoencephalography (MEG) recordings of brain activity.

The usability of Brain Computer Interfaces (BCI) based on the P300 speller is severely hindered by the need for long training times and many repetitions of the same stimulus. In this contribution we introduce a set of unsupervised hierarchical probabilistic models that tackle both problems simultaneously by incorporating prior knowledge from two sources: information from other training subjects (through transfer learning) and information about the words being spelled (through language models). We show, that due to this prior knowledge, the performance of the unsupervised models parallels and in some cases even surpasses that of supervised models, while eliminating the tedious training session.

We propose a simple and novel framework for MCMC inference in continuous-time discrete-state systems with pure jump trajectories. We construct an exact MCMC sampler for such systems by alternately sampling a random discretization of time given a trajectory of the system, and then a new trajectory given the discretization. The first step can be performed efficiently using properties of the Poisson process, while the second step can avail of discrete-time MCMC techniques based on the forward-backward algorithm. We compare our approach to particle MCMC and a uniformization-based sampler, and show its advantages.

We address the problem of estimating the difference between two probability densities. A naive approach is a two-step procedure of first estimating two densities separately and then computing their difference. However, such a two-step procedure does not necessarily work well because the first step is performed without regard to the second step and thus a small estimation error incurred in the first stage can cause a big error in the second stage. In this paper, we propose a single-shot procedure for directly estimating the density difference without separately estimating two densities. We derive a non-parametric finite-sample error bound for the proposed single-shot density-difference estimator and show that it achieves the optimal convergence rate. We then show how the proposed density-difference estimator can be utilized in L2-distance approximation. Finally, we experimentally demonstrate the usefulness of the proposed method in robust distribution comparison such as class-prior estimation and change-point detection.

Identifying patterns from the neuroimaging recordings of brain activity related to the unobservable psychological or mental state of an individual can be treated as a unsupervised pattern recognition problem. The main challenges, however, for such an analysis of fMRI data are: a) defining a physiologically meaningful feature-space for representing the spatial patterns across time; b) dealing with the high-dimensionality of the data; and c) robustness to the various artifacts and confounds in the fMRI time-series. In this paper, we present a network-aware feature-space to represent the states of a general network, that enables comparing and clustering such states in a manner that is a) meaningful in terms of the network connectivity structure; b)computationally efficient; c) low-dimensional; and d) relatively robust to structured and random noise artifacts. This feature-space is obtained from a spherical relaxation of the transportation distance metric which measures the cost of transporting ``mass'' over the network to transform one function into another. Through theoretical and empirical assessments, we demonstrate the accuracy and efficiency of the approximation, especially for large problems. While the application presented here is for identifying distinct brain activity patterns from fMRI, this feature-space can be applied to the problem of identifying recurring patterns and detecting outliers in measurements on many different types of networks, including sensor, control and social networks.

A new framework based on the theory of copulas is proposed to address semi-supervised domain adaptation problems. The presented method factorizes any multivariate density into a product of marginal distributions and bivariate copula functions. Therefore, changes in each of these factors can be detected and corrected to adapt a density model across different learning domains. Importantly, we introduce a novel vine copula model, which allows for this factorization in a non-parametric manner. Experimental results on regression problems with real-world data illustrate the efficacy of the proposed approach when compared to state-of-the-art techniques.

We present a simplex algorithm for linear programming in a linear classification formulation. The paramount complexity parameter in linear classification problems is called the margin. We prove that for margin values of practical interest our simplex variant performs a polylogarithmic number of pivot steps in the worst case, and its overall running time is near linear. This is in contrast to general linear programming, for which no sub-polynomial pivot rule is known.

We consider estimation of multiple high-dimensional Gaussian graphical models correspondingto a single set of nodes under several distinct conditions. We assume that most aspects of the networks are shared, but that there are some structured differencesbetween them. Specifically, the network differences are generated from node perturbations: a few nodes are perturbed across networks, and most or all edges stemming from such nodes differ between networks. This corresponds toa simple model for the mechanism underlying many cancers, in which the gene regulatory network is disrupted due to the aberrant activity of a few specific genes.We propose to solve this problem using the perturbed-node joint graphical lasso, a convex optimization problem that is based upon the use of a row-column overlap norm penalty. We then solve the convex problem using an alternating directions method of multipliers algorithm. Our proposal is illustrated on synthetic data and on an application to brain cancer gene expression data.

In this paper we study sparsity-inducing nonconvex penalty functions using Lévy processes. We define such a penalty as the Laplace exponent of a subordinator. Accordingly,we propose a novel approach for the construction of sparsityinducing nonconvexpenalties. Particularly, we show that the nonconvex logarithmic (LOG) and exponential (EXP) penalty functions are the Laplace exponents of Gamma and compound Poisson subordinators, respectively. Additionally, we explore the concave conjugate of nonconvex penalties. We find that the LOG and EXP penalties are the concave conjugates of negative Kullback-Leiber (KL) distance functions.Furthermore, the relationship between these two penalties is due to asymmetricity of the KL distance.