Diabetes complications often afflict diabetes patients seriously: over 68% of diabetes-related mortality is caused by diabetes complications. In this paper, we study the problem of automatically diagnosing diabetes complications from patients' lab test results. The objective problem has two main challenges: 1) feature sparseness: a patient only undergoes 1.26% lab tests on average, and 65.5% types of lab tests are performed on samples from less than 10 patients; 2) knowledge skewness: it lacks comprehensive detailed domain knowledge of the association between diabetes complications and lab tests. To address these challenges, we propose a novel probabilistic model called Sparse Factor Graph Model (SparseFGM). SparseFGM projects sparse features onto a lower-dimensional latent space, which alleviates the problem of sparseness. SparseFGM is also able to capture the associations between complications and lab tests, which help handle the knowledge skewness. We evaluate the proposed model on a large collections of real medical records. SparseFGM outperforms (+20% by F1) baselines significantly and gives detailed associations between diabetes complications and lab tests.

In this paper, we focus on Stochastic Composite Optimization (SCO) for sparse learning that aims to learn a sparse solution. Although many SCO algorithms have been developed for sparse learning with an optimal convergence rate $O(1/T)$, they often fail to deliver sparse solutions at the end either because of the limited sparsity regularization during stochastic optimization or due to the limitation in online-to-batch conversion. To improve the sparsity of solutions obtained by SCO, we propose a simple but effective stochastic optimization scheme that adds a novel sparse online-to-batch conversion to the traditional SCO algorithms. The theoretical analysis shows that our scheme can find a solution with better sparse patterns without affecting the convergence rate. Experimental results on both synthetic and real-world data sets show that the proposed methods are more effective in recovering the sparse solution and have comparable convergence rate as the state-of-the-art SCO algorithms for sparse learning.

In disease mapping, the spatial scan statistic is used to detect spatial regions where population is exposed to a significantly higher disease risk than expected. In this important application, the current residence is typically used to define the location of individuals from the population. Considering the mobility of humans at various temporal and spatial scales, using only information about the current residence may be an insufficiently informative proxy because it ignores a multitude of exposures that may occur away from home, or which had occurred at previous residences. In this paper, we propose a spatial scan statistic that is appropriate for disease mapping on mobile populations. We formulate a computationally efficient algorithm that uses the proposed statistic to find significant high-risk regions from mobile population's disease status data. The algorithm is applicable on large populations and over dense spatial grids. The experimental results demonstrate that the proposed algorithm is computationally efficient and outperforms the traditional disease clustering approaches at discovering high-risk regions in mobile populations.

The emergence of location based social network (LBSN) services makes it possible to study individuals’ mobility patterns at a fine-grained level and to see how they are impacted by social factors. In this study we analyze the check-in patterns in LBSN and observe significant temporal clustering of check-in activities. We explore how self-reinforcing behaviors, social factors, and exogenous effects contribute to this clustering and introduce a framework to distinguish these effects at the level of individual check-ins for both users and venues. Using check-in data from three major cities, we show not only that our model can improve prediction of future check-ins, but also that disentangling of different factors allows us to infer meaningful properties of different venues.

Tensor completion is an important topic in the area of image processing and computer vision research, which is generally built on extraction of the intrinsic structure of the tensor data. Drawing on this fact, action classification, relying heavily on the extracted features of high-dimensional tensors, may indeed benefit from tensor completion techniques. In this paper, we propose a low-rank tensor completion method for action classification, as well as image recovery. Since there may exist distortion and corruption in the tensor representations of video sequences, we project the tensors into a subspace, which contains the invariant structure of the tensors. In order to integrate useful supervisory information for classification, we adopt a discriminant analysis criterion to learn the projection matrices. The resulting multi-variate optimization problem can be effectively solved using the augmented Lagrange multiplier (ALM) algorithm. Experiments demonstrate that our method results with better accuracy compared with some other state-of-the-art low-rank tensor representation learning approaches on the MSR Hand Gesture 3D database and the MSR Action 3D database. By denoising the Multi-PIE face database, our experimental setup testifies the proposed method can also be employed to recover images.

The modern sensor technology helps us collect time series data for activities of daily living (ADLs), which in turn can be used to infer broad patterns, such as common daily routines. Most of the existing approaches either rely on a model trained by a preselected and manually labeled set of activities, or perform micro-pattern analysis with manually selected length and number of micro-patterns. Since real life ADL datasets are massive, such approaches would be too costly to apply. Thus, there is a need to formulate unsupervised methods that can be applied to different time scales.We propose a novel approach to discover clusters of daily activity routines.We use a matrix decomposition method to isolate routines and deviations to obtain two different sets of clusters. We obtain the final memberships via the cross product of these sets. We validate our approach using two real-life ADL datasets and a well-known artificial dataset. Based on average silhouette width scores, our approach can capture strong structures in the underlying data. Furthermore, results show that our approach improves on the accuracy of the baseline algorithms by 12% with a statistical significance (p < 0.05) using the Wilcoxon signed-rank comparison test.

Explosive growth of multimedia data has brought challenge of how to efficiently browse, retrieve and organize these data. Under this circumstance, different approaches have been proposed to facilitate multimedia analysis. Several semi-supervised feature selection algorithms have been proposed to exploit both labeled and unlabeled data. However, they are implemented based on graphs, such that they cannot handle large-scale datasets. How to conduct semi-supervised feature selection on large-scale datasets has become a challenging research problem. Moreover, existing multi-label feature selection algorithms rely on eigen-decomposition with heavy computational burden, which further prevent current feature selection algorithms from being applied for big data. In this paper, we propose a novel convex semi-supervised multi-label feature selection algorithm, which can be applied to large-scale datasets. We evaluate performance of the proposed algorithm over five benchmark datasets and compare the results with state-of-the-art supervised and semi-supervised feature selection algorithms as well as baseline using all features. The experimental results demonstrate that our proposed algorithm consistently achieve superiors performances.

This paper presents the beginnings of an automatic statistician, focusing on regression problems. Our system explores an open-ended space of statistical models to discover a good explanation of a data set, and then produces a detailed report with figures and natural-language text. Our approach treats unknown regression functions nonparametrically using Gaussian processes, which has two important consequences. First, Gaussian processes can model functions in terms of high-level properties (e.g. smoothness, trends, periodicity, changepoints). Taken together with the compositional structure of our language of models this allows us to automatically describe functions in simple terms. Second, the use of flexible nonparametric models and a rich language for composing them in an open-ended manner also results in state-of-the-art extrapolation performance evaluated over 13 real time series data sets from various domains.

Recently deep learning has been successfully adopted in many applications such as speech recognition and image classification. In this work, we explore the possibility of employing deep learning in graph clustering. We propose a simple method, which first learns a nonlinear embedding of the original graph by stacked autoencoder, and then runs $k$-means algorithm on the embedding to obtain the clustering result. We show that this simple method has solid theoretical foundation, due to the similarity between autoencoder and spectral clustering in terms of what they actually optimize. Then, we demonstrate that the proposed method is more efficient and flexible than spectral clustering. First, the computational complexity of autoencoder is much lower than spectral clustering: the former can be linear to the number of nodes in a sparse graph while the latter is super quadratic due to eigenvalue decomposition. Second, when additional sparsity constraint is imposed, we can simply employ the sparse autoencoder developed in the literature of deep learning; however, it is non-straightforward to implement a sparse spectral method. The experimental results on various graph datasets show that the proposed method significantly outperforms conventional spectral clustering which clearly indicates the effectiveness of deep learning in graph clustering.

For expressive ontology languages such as OWL 2 DL, classification is a computationally expensive task—2NEXPTIME-complete in the worst case. Hence, it is highly desirable to be able to accurately estimate classification time, especially for large and complex ontologies. Recently, machine learning techniques have been successfully applied to predicting the reasoning hardness category for a given (ontology, reasoner) pair. In this paper, we further develop predictive models to estimate actual classification time using regression techniques, with ontology metrics as features. Our large-scale experiments on 6 state-of-the-art OWL 2 DL reasoners and more than 450 significantly diverse ontologies demonstrate that the prediction models achieve high accuracy, good generalizability and statistical significance. Such prediction models have a wide range of applications. We demonstrate how they can be used to efficiently and accurately identify performance hotspots in a large and complex ontology, an otherwise very time-consuming and resource-intensive task.