Computational intensity and sequential nature of estimation techniques for Bayesian methods in statistics and machine learning, combined with their increasing applications for big data analytics, necessitate both the identification of potential opportunities to parallelize techniques such as MCMC sampling, and the development of general strategies for mapping such parallel algorithms to modern CPUs in order to elicit the performance up the compute-based and/or memory-based hardware limits. Two opportunities for Single-Instruction Multiple-Data (SIMD) parallelization of MCMC sampling for probabilistic graphical models are presented. In exchangeable models with many observations such as Bayesian Generalized Linear Models, child-node contributions to the conditional posterior of each node can be calculated concurrently. In undirected graphs with discrete nodes, concurrent sampling of conditionally-independent nodes can be transformed into a SIMD form. High-performance libraries with multi-threading and vectorization capabilities can be readily applied to such SIMD opportunities to gain decent speedup, while a series of high-level source-code and runtime modifications provide further performance boost by reducing parallelization overhead and increasing data locality for NUMA architectures. For big-data Bayesian GLM graphs, the end-result is a routine for evaluating the conditional posterior and its gradient vector that is 5 times faster than a naive implementation using (built-in) multi-threaded Intel MKL BLAS, and reaches within the striking distance of the memory-bandwidth-induced hardware limit. The proposed optimization strategies improve the scaling of performance with number of cores and width of vector units (applicable to many-core SIMD processors such as Intel Xeon Phi and GPUs), resulting in cost-effectiveness, energy efficiency, and higher speed on multi-core x86 processors.

Modeling dynamical systems with ordinary differential equations implies a mechanistic view of the process underlying the dynamics. However in many cases, this knowledge is not available. To overcome this issue, we introduce a general framework for nonparametric ODE models using penalized regression in Reproducing Kernel Hilbert Spaces (RKHS) based on operator-valued kernels. Moreover, we extend the scope of gradient matching approaches to nonparametric ODE. A smooth estimate of the solution ODE is built to provide an approximation of the derivative of the ODE solution which is in turn used to learn the nonparametric ODE model. This approach benefits from the flexibility of penalized regression in RKHS allowing for ridge or (structured) sparse regression as well. Very good results are shown on 3 different ODE systems.

Binary classification is a common statistical learning problem in which a model is estimated on a set of covariates for some outcome indicating the membership of one of two classes. In the literature, there exists a distinction between hard and soft classification. In soft classification, the conditional class probability is modeled as a function of the covariates. In contrast, hard classification methods only target the optimal prediction boundary. While hard and soft classification methods have been studied extensively, not much work has been done to compare the actual tasks of hard and soft classification. In this paper we propose a spectrum of statistical learning problems which span the hard and soft classification tasks based on fitting multiple decision rules to the data. By doing so, we reveal a novel collection of learning tasks of increasing complexity. We study the problems using the framework of large-margin classifiers and a class of piecewise linear convex surrogates, for which we derive statistical properties and a corresponding sub-gradient descent algorithm. We conclude by applying our approach to simulation settings and a magnetic resonance imaging (MRI) dataset from the Alzheimer's Disease Neuroimaging Initiative (ADNI) study.

Correlation filters (CFs) are a class of classifiers that are attractive for object localization and tracking applications. Traditionally, CFs have been designed in the frequency domain using the discrete Fourier transform (DFT), where correlation is efficiently implemented. However, existing CF designs do not account for the fact that the multiplication of two DFTs in the frequency domain corresponds to a circular correlation in the time/spatial domain. Because this was previously unaccounted for, prior CF designs are not truly optimal, as their optimization criteria do not accurately quantify their optimization intention. In this paper, we introduce new zero-aliasing constraints that completely eliminate this aliasing problem by ensuring that the optimization criterion for a given CF corresponds to a linear correlation rather than a circular correlation. This means that previous CF designs can be significantly improved by this reformulation. We demonstrate the benefits of this new CF design approach with several important CFs. We present experimental results on diverse data sets and present solutions to the computational challenges associated with computing these CFs. Code for the CFs described in this paper and their respective zero-aliasing versions is available at http://vishnu.boddeti.net/projects/correlation-filters.html

We derive a convex optimization problem for the task of segmenting sequential data, which explicitly treats presence of outliers. We describe two algorithms for solving this problem, one exact and one a top-down novel approach, and we derive a consistency results for the case of two segments and no outliers. Robustness to outliers is evaluated on two real-world tasks related to speech segmentation. Our algorithms outperform baseline segmentation algorithms.

This paper examines the problem of locating outlier columns in a large, otherwise low-rank, matrix. We propose a simple two-step adaptive sensing and inference approach and establish theoretical guarantees for its performance; our results show that accurate outlier identification is achievable using very few linear summaries of the original data matrix -- as few as the squared rank of the low-rank component plus the number of outliers, times constant and logarithmic factors. We demonstrate the performance of our approach experimentally in two stylized applications, one motivated by robust collaborative filtering tasks, and the other by saliency map estimation tasks arising in computer vision and automated surveillance, and also investigate extensions to settings where the data are noisy, or possibly incomplete.

The expressive power of a Gaussian process (GP) model comes at a cost of poor scalability in the data size. To improve its scalability, this paper presents a low-rank-cum-Markov approximation (LMA) of the GP model that is novel in leveraging the dual computational advantages stemming from complementing a low-rank approximate representation of the full-rank GP based on a support set of inputs with a Markov approximation of the resulting residual process; the latter approximation is guaranteed to be closest in the Kullback-Leibler distance criterion subject to some constraint and is considerably more refined than that of existing sparse GP models utilizing low-rank representations due to its more relaxed conditional independence assumption (especially with larger data). As a result, our LMA method can trade off between the size of the support set and the order of the Markov property to (a) incur lower computational cost than such sparse GP models while achieving predictive performance comparable to them and (b) accurately represent features/patterns of any scale. Interestingly, varying the Markov order produces a spectrum of LMAs with PIC approximation and full-rank GP at the two extremes. An advantage of our LMA method is that it is amenable to parallelization on multiple machines/cores, thereby gaining greater scalability. Empirical evaluation on three real-world datasets in clusters of up to 32 computing nodes shows that our centralized and parallel LMA methods are significantly more time-efficient and scalable than state-of-the-art sparse and full-rank GP regression methods while achieving comparable predictive performances.

Online advertising is an important and huge industry. Having knowledge of the website attributes can contribute greatly to business strategies for ad-targeting, content display, inventory purchase or revenue prediction. Classical inferences on users and sites impose challenge, because the data is voluminous, sparse, high-dimensional and noisy. In this paper, we introduce a stochastic blockmodeling for the website relations induced by the event of online user visitation. We propose two clustering algorithms to discover the instrinsic structures of websites, and compare the performance with a goodness-of-fit method and a deterministic graph partitioning method. We demonstrate the effectiveness of our algorithms on both simulation and AOL website dataset.

Subset selection from massive data with noised information is increasingly popular for various applications. This problem is still highly challenging as current methods are generally slow in speed and sensitive to outliers. To address the above two issues, we propose an accelerated robust subset selection (ARSS) method. Specifically in the subset selection area, this is the first attempt to employ the $\ell_{p}(0

This paper studies large-scale dynamical networks where the current state of the system is a linear transformation of the previous state, contaminated by a multivariate Gaussian noise. Examples include stock markets, human brains and gene regulatory networks. We introduce a transition matrix to describe the evolution, which can be translated to a directed Granger transition graph, and use the concentration matrix of the Gaussian noise to capture the second-order relations between nodes, which can be translated to an undirected conditional dependence graph. We propose regularizing the two graphs jointly in topology identification and dynamics estimation. Based on the notion of joint association graph (JAG), we develop a joint graphical screening and estimation (JGSE) framework for efficient network learning in big data. In particular, our method can pre-determine and remove unnecessary edges based on the joint graphical structure, referred to as JAG screening, and can decompose a large network into smaller subnetworks in a robust manner, referred to as JAG decomposition. JAG screening and decomposition can reduce the problem size and search space for fine estimation at a later stage. Experiments on both synthetic data and real-world applications show the effectiveness of the proposed framework in large-scale network topology identification and dynamics estimation.